data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 1 A . 1 SER . 1 6005 1 1 1 1 2 THR 1 A . 2 THR . 1 6005 1 1 1 1 3 ARG 1 A . 3 ARG g 1 6005 1 1 1 1 4 TYR 1 A . 4 TYR o 1 6005 1 1 1 1 5 LYS 1 A . 5 LYS k 1 6005 1 1 1 1 6 THR 1 A . 6 THR b 1 6005 1 1 1 1 7 GLU 1 A . 7 GLU c 1 6005 1 1 1 1 8 LEU 1 A . 8 LEU c 1 6005 1 1 1 1 9 CYS 1 A . 9 CYS f 1 6005 1 1 1 1 10 ARG 1 A . 10 ARG k 1 6005 1 1 1 1 11 PRO 1 A . 11 PRO l 1 6005 1 1 1 1 12 PHE 1 A . 12 PHE m 1 6005 1 1 1 1 13 GLU 1 A . 13 GLU m 1 6005 1 1 1 1 14 GLU 1 A . 14 GLU n 1 6005 1 1 1 1 15 SER 1 A . 15 SER o 1 6005 1 1 1 1 16 GLY 1 A . 16 GLY p 1 6005 1 1 1 1 17 THR 1 A . 17 THR a 1 6005 1 1 1 1 18 CYS 1 A . 18 CYS f 1 6005 1 1 1 1 19 LYS 1 A . 19 LYS k 1 6005 1 1 1 1 20 TYR 1 A . 20 TYR l 1 6005 1 1 1 1 21 GLY 1 A . 21 GLY m 1 6005 1 1 1 1 22 GLU 1 A . 22 GLU m 1 6005 1 1 1 1 23 LYS 1 A . 23 LYS l 1 6005 1 1 1 1 24 CYS 1 A . 24 CYS c 1 6005 1 1 1 1 25 GLN 1 A . 25 GLN b 1 6005 1 1 1 1 26 PHE 1 A . 26 PHE d 1 6005 1 1 1 1 27 ALA 1 A . 27 ALA f 1 6005 1 1 1 1 28 HIS 1 A . 28 HIS b 1 6005 1 1 1 1 29 GLY 1 A . 29 GLY f 1 6005 1 1 1 1 30 PHE 1 A . 30 PHE k 1 6005 1 1 1 1 31 HIS 1 A . 31 HIS l 1 6005 1 1 1 1 32 GLU 1 A . 32 GLU p 1 6005 1 1 1 1 33 LEU 1 A . 33 LEU c 1 6005 1 1 1 1 34 ARG 1 A . 34 ARG c 1 6005 1 1 1 1 35 SER 1 A . 35 SER d 1 6005 1 1 1 1 36 LEU 1 A . 36 LEU d 1 6005 1 1 1 1 37 THR 1 A . 37 THR d 1 6005 1 1 1 1 38 ARG 1 A . 38 ARG d 1 6005 1 1 1 1 39 HIS 1 A . 39 HIS f 1 6005 1 1 1 1 40 PRO 1 A . 40 PRO k 1 6005 1 1 1 1 41 LYS 1 A . 41 LYS g 1 6005 1 1 1 1 42 TYR 1 A . 42 TYR o 1 6005 1 1 1 1 43 LYS 1 A . 43 LYS k 1 6005 1 1 1 1 44 THR 1 A . 44 THR b 1 6005 1 1 1 1 45 GLU 1 A . 45 GLU c 1 6005 1 1 1 1 46 LEU 1 A . 46 LEU c 1 6005 1 1 1 1 47 CYS 1 A . 47 CYS f 1 6005 1 1 1 1 48 ARG 1 A . 48 ARG k 1 6005 1 1 1 1 49 THR 1 A . 49 THR l 1 6005 1 1 1 1 50 PHE 1 A . 50 PHE m 1 6005 1 1 1 1 51 HIS 1 A . 51 HIS m 1 6005 1 1 1 1 52 THR 1 A . 52 THR n 1 6005 1 1 1 1 53 ILE 1 A . 53 ILE o 1 6005 1 1 1 1 54 GLY 1 A . 54 GLY p 1 6005 1 1 1 1 55 PHE 1 A . 55 PHE a 1 6005 1 1 1 1 56 CYS 1 A . 56 CYS f 1 6005 1 1 1 1 57 PRO 1 A . 57 PRO k 1 6005 1 1 1 1 58 TYR 1 A . 58 TYR l 1 6005 1 1 1 1 59 GLY 1 A . 59 GLY m 1 6005 1 1 1 1 60 PRO 1 A . 60 PRO m 1 6005 1 1 1 1 61 ARG 1 A . 61 ARG b 1 6005 1 1 1 1 62 CYS 1 A . 62 CYS c 1 6005 1 1 1 1 63 HIS 1 A . 63 HIS b 1 6005 1 1 1 1 64 PHE 1 A . 64 PHE d 1 6005 1 1 1 1 65 ILE 1 A . 65 ILE f 1 6005 1 1 1 1 66 HIS 1 A . 66 HIS b 1 6005 1 1 1 1 67 ASN 1 A . 67 ASN f 1 6005 1 1 1 1 68 ALA 1 A . 68 ALA b 1 6005 1 1 1 1 69 ASP 1 A . 69 ASP . 1 6005 1 1 1 1 70 GLU 1 A . 70 GLU . 1 6005 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfkloccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 2 A . 1 SER . 1 6005 2 1 1 1 2 THR 2 A . 2 THR . 1 6005 2 1 1 1 3 ARG 2 A . 3 ARG g 1 6005 2 1 1 1 4 TYR 2 A . 4 TYR o 1 6005 2 1 1 1 5 LYS 2 A . 5 LYS k 1 6005 2 1 1 1 6 THR 2 A . 6 THR b 1 6005 2 1 1 1 7 GLU 2 A . 7 GLU c 1 6005 2 1 1 1 8 LEU 2 A . 8 LEU c 1 6005 2 1 1 1 9 CYS 2 A . 9 CYS f 1 6005 2 1 1 1 10 ARG 2 A . 10 ARG k 1 6005 2 1 1 1 11 PRO 2 A . 11 PRO l 1 6005 2 1 1 1 12 PHE 2 A . 12 PHE m 1 6005 2 1 1 1 13 GLU 2 A . 13 GLU m 1 6005 2 1 1 1 14 GLU 2 A . 14 GLU n 1 6005 2 1 1 1 15 SER 2 A . 15 SER o 1 6005 2 1 1 1 16 GLY 2 A . 16 GLY p 1 6005 2 1 1 1 17 THR 2 A . 17 THR a 1 6005 2 1 1 1 18 CYS 2 A . 18 CYS f 1 6005 2 1 1 1 19 LYS 2 A . 19 LYS k 1 6005 2 1 1 1 20 TYR 2 A . 20 TYR l 1 6005 2 1 1 1 21 GLY 2 A . 21 GLY m 1 6005 2 1 1 1 22 GLU 2 A . 22 GLU m 1 6005 2 1 1 1 23 LYS 2 A . 23 LYS l 1 6005 2 1 1 1 24 CYS 2 A . 24 CYS c 1 6005 2 1 1 1 25 GLN 2 A . 25 GLN b 1 6005 2 1 1 1 26 PHE 2 A . 26 PHE d 1 6005 2 1 1 1 27 ALA 2 A . 27 ALA f 1 6005 2 1 1 1 28 HIS 2 A . 28 HIS b 1 6005 2 1 1 1 29 GLY 2 A . 29 GLY f 1 6005 2 1 1 1 30 PHE 2 A . 30 PHE k 1 6005 2 1 1 1 31 HIS 2 A . 31 HIS l 1 6005 2 1 1 1 32 GLU 2 A . 32 GLU o 1 6005 2 1 1 1 33 LEU 2 A . 33 LEU c 1 6005 2 1 1 1 34 ARG 2 A . 34 ARG c 1 6005 2 1 1 1 35 SER 2 A . 35 SER d 1 6005 2 1 1 1 36 LEU 2 A . 36 LEU d 1 6005 2 1 1 1 37 THR 2 A . 37 THR d 1 6005 2 1 1 1 38 ARG 2 A . 38 ARG d 1 6005 2 1 1 1 39 HIS 2 A . 39 HIS f 1 6005 2 1 1 1 40 PRO 2 A . 40 PRO k 1 6005 2 1 1 1 41 LYS 2 A . 41 LYS g 1 6005 2 1 1 1 42 TYR 2 A . 42 TYR o 1 6005 2 1 1 1 43 LYS 2 A . 43 LYS k 1 6005 2 1 1 1 44 THR 2 A . 44 THR b 1 6005 2 1 1 1 45 GLU 2 A . 45 GLU c 1 6005 2 1 1 1 46 LEU 2 A . 46 LEU c 1 6005 2 1 1 1 47 CYS 2 A . 47 CYS f 1 6005 2 1 1 1 48 ARG 2 A . 48 ARG k 1 6005 2 1 1 1 49 THR 2 A . 49 THR l 1 6005 2 1 1 1 50 PHE 2 A . 50 PHE m 1 6005 2 1 1 1 51 HIS 2 A . 51 HIS m 1 6005 2 1 1 1 52 THR 2 A . 52 THR n 1 6005 2 1 1 1 53 ILE 2 A . 53 ILE o 1 6005 2 1 1 1 54 GLY 2 A . 54 GLY p 1 6005 2 1 1 1 55 PHE 2 A . 55 PHE a 1 6005 2 1 1 1 56 CYS 2 A . 56 CYS f 1 6005 2 1 1 1 57 PRO 2 A . 57 PRO k 1 6005 2 1 1 1 58 TYR 2 A . 58 TYR l 1 6005 2 1 1 1 59 GLY 2 A . 59 GLY m 1 6005 2 1 1 1 60 PRO 2 A . 60 PRO m 1 6005 2 1 1 1 61 ARG 2 A . 61 ARG b 1 6005 2 1 1 1 62 CYS 2 A . 62 CYS c 1 6005 2 1 1 1 63 HIS 2 A . 63 HIS b 1 6005 2 1 1 1 64 PHE 2 A . 64 PHE d 1 6005 2 1 1 1 65 ILE 2 A . 65 ILE f 1 6005 2 1 1 1 66 HIS 2 A . 66 HIS b 1 6005 2 1 1 1 67 ASN 2 A . 67 ASN f 1 6005 2 1 1 1 68 ALA 2 A . 68 ALA b 1 6005 2 1 1 1 69 ASP 2 A . 69 ASP . 1 6005 2 1 1 1 70 GLU 2 A . 70 GLU . 1 6005 2 stop_ save_ save_PB_annotation_3 _PB_list.Sf_category PB_list _PB_list.ID 3 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfkloccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 3 A . 1 SER . 1 6005 3 1 1 1 2 THR 3 A . 2 THR . 1 6005 3 1 1 1 3 ARG 3 A . 3 ARG g 1 6005 3 1 1 1 4 TYR 3 A . 4 TYR o 1 6005 3 1 1 1 5 LYS 3 A . 5 LYS k 1 6005 3 1 1 1 6 THR 3 A . 6 THR b 1 6005 3 1 1 1 7 GLU 3 A . 7 GLU c 1 6005 3 1 1 1 8 LEU 3 A . 8 LEU c 1 6005 3 1 1 1 9 CYS 3 A . 9 CYS f 1 6005 3 1 1 1 10 ARG 3 A . 10 ARG k 1 6005 3 1 1 1 11 PRO 3 A . 11 PRO l 1 6005 3 1 1 1 12 PHE 3 A . 12 PHE m 1 6005 3 1 1 1 13 GLU 3 A . 13 GLU m 1 6005 3 1 1 1 14 GLU 3 A . 14 GLU n 1 6005 3 1 1 1 15 SER 3 A . 15 SER o 1 6005 3 1 1 1 16 GLY 3 A . 16 GLY p 1 6005 3 1 1 1 17 THR 3 A . 17 THR a 1 6005 3 1 1 1 18 CYS 3 A . 18 CYS f 1 6005 3 1 1 1 19 LYS 3 A . 19 LYS k 1 6005 3 1 1 1 20 TYR 3 A . 20 TYR l 1 6005 3 1 1 1 21 GLY 3 A . 21 GLY m 1 6005 3 1 1 1 22 GLU 3 A . 22 GLU m 1 6005 3 1 1 1 23 LYS 3 A . 23 LYS l 1 6005 3 1 1 1 24 CYS 3 A . 24 CYS c 1 6005 3 1 1 1 25 GLN 3 A . 25 GLN b 1 6005 3 1 1 1 26 PHE 3 A . 26 PHE d 1 6005 3 1 1 1 27 ALA 3 A . 27 ALA f 1 6005 3 1 1 1 28 HIS 3 A . 28 HIS b 1 6005 3 1 1 1 29 GLY 3 A . 29 GLY f 1 6005 3 1 1 1 30 PHE 3 A . 30 PHE k 1 6005 3 1 1 1 31 HIS 3 A . 31 HIS l 1 6005 3 1 1 1 32 GLU 3 A . 32 GLU o 1 6005 3 1 1 1 33 LEU 3 A . 33 LEU c 1 6005 3 1 1 1 34 ARG 3 A . 34 ARG c 1 6005 3 1 1 1 35 SER 3 A . 35 SER d 1 6005 3 1 1 1 36 LEU 3 A . 36 LEU d 1 6005 3 1 1 1 37 THR 3 A . 37 THR d 1 6005 3 1 1 1 38 ARG 3 A . 38 ARG d 1 6005 3 1 1 1 39 HIS 3 A . 39 HIS f 1 6005 3 1 1 1 40 PRO 3 A . 40 PRO k 1 6005 3 1 1 1 41 LYS 3 A . 41 LYS g 1 6005 3 1 1 1 42 TYR 3 A . 42 TYR o 1 6005 3 1 1 1 43 LYS 3 A . 43 LYS k 1 6005 3 1 1 1 44 THR 3 A . 44 THR b 1 6005 3 1 1 1 45 GLU 3 A . 45 GLU c 1 6005 3 1 1 1 46 LEU 3 A . 46 LEU c 1 6005 3 1 1 1 47 CYS 3 A . 47 CYS f 1 6005 3 1 1 1 48 ARG 3 A . 48 ARG k 1 6005 3 1 1 1 49 THR 3 A . 49 THR l 1 6005 3 1 1 1 50 PHE 3 A . 50 PHE m 1 6005 3 1 1 1 51 HIS 3 A . 51 HIS m 1 6005 3 1 1 1 52 THR 3 A . 52 THR n 1 6005 3 1 1 1 53 ILE 3 A . 53 ILE o 1 6005 3 1 1 1 54 GLY 3 A . 54 GLY p 1 6005 3 1 1 1 55 PHE 3 A . 55 PHE a 1 6005 3 1 1 1 56 CYS 3 A . 56 CYS f 1 6005 3 1 1 1 57 PRO 3 A . 57 PRO k 1 6005 3 1 1 1 58 TYR 3 A . 58 TYR l 1 6005 3 1 1 1 59 GLY 3 A . 59 GLY m 1 6005 3 1 1 1 60 PRO 3 A . 60 PRO m 1 6005 3 1 1 1 61 ARG 3 A . 61 ARG b 1 6005 3 1 1 1 62 CYS 3 A . 62 CYS c 1 6005 3 1 1 1 63 HIS 3 A . 63 HIS b 1 6005 3 1 1 1 64 PHE 3 A . 64 PHE d 1 6005 3 1 1 1 65 ILE 3 A . 65 ILE f 1 6005 3 1 1 1 66 HIS 3 A . 66 HIS b 1 6005 3 1 1 1 67 ASN 3 A . 67 ASN f 1 6005 3 1 1 1 68 ALA 3 A . 68 ALA b 1 6005 3 1 1 1 69 ASP 3 A . 69 ASP . 1 6005 3 1 1 1 70 GLU 3 A . 70 GLU . 1 6005 3 stop_ save_ save_PB_annotation_4 _PB_list.Sf_category PB_list _PB_list.ID 4 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 4 A . 1 SER . 1 6005 4 1 1 1 2 THR 4 A . 2 THR . 1 6005 4 1 1 1 3 ARG 4 A . 3 ARG g 1 6005 4 1 1 1 4 TYR 4 A . 4 TYR o 1 6005 4 1 1 1 5 LYS 4 A . 5 LYS k 1 6005 4 1 1 1 6 THR 4 A . 6 THR b 1 6005 4 1 1 1 7 GLU 4 A . 7 GLU c 1 6005 4 1 1 1 8 LEU 4 A . 8 LEU c 1 6005 4 1 1 1 9 CYS 4 A . 9 CYS f 1 6005 4 1 1 1 10 ARG 4 A . 10 ARG k 1 6005 4 1 1 1 11 PRO 4 A . 11 PRO l 1 6005 4 1 1 1 12 PHE 4 A . 12 PHE m 1 6005 4 1 1 1 13 GLU 4 A . 13 GLU m 1 6005 4 1 1 1 14 GLU 4 A . 14 GLU n 1 6005 4 1 1 1 15 SER 4 A . 15 SER o 1 6005 4 1 1 1 16 GLY 4 A . 16 GLY p 1 6005 4 1 1 1 17 THR 4 A . 17 THR a 1 6005 4 1 1 1 18 CYS 4 A . 18 CYS f 1 6005 4 1 1 1 19 LYS 4 A . 19 LYS k 1 6005 4 1 1 1 20 TYR 4 A . 20 TYR l 1 6005 4 1 1 1 21 GLY 4 A . 21 GLY m 1 6005 4 1 1 1 22 GLU 4 A . 22 GLU m 1 6005 4 1 1 1 23 LYS 4 A . 23 LYS l 1 6005 4 1 1 1 24 CYS 4 A . 24 CYS c 1 6005 4 1 1 1 25 GLN 4 A . 25 GLN b 1 6005 4 1 1 1 26 PHE 4 A . 26 PHE d 1 6005 4 1 1 1 27 ALA 4 A . 27 ALA f 1 6005 4 1 1 1 28 HIS 4 A . 28 HIS b 1 6005 4 1 1 1 29 GLY 4 A . 29 GLY f 1 6005 4 1 1 1 30 PHE 4 A . 30 PHE k 1 6005 4 1 1 1 31 HIS 4 A . 31 HIS l 1 6005 4 1 1 1 32 GLU 4 A . 32 GLU p 1 6005 4 1 1 1 33 LEU 4 A . 33 LEU c 1 6005 4 1 1 1 34 ARG 4 A . 34 ARG c 1 6005 4 1 1 1 35 SER 4 A . 35 SER d 1 6005 4 1 1 1 36 LEU 4 A . 36 LEU d 1 6005 4 1 1 1 37 THR 4 A . 37 THR d 1 6005 4 1 1 1 38 ARG 4 A . 38 ARG d 1 6005 4 1 1 1 39 HIS 4 A . 39 HIS f 1 6005 4 1 1 1 40 PRO 4 A . 40 PRO k 1 6005 4 1 1 1 41 LYS 4 A . 41 LYS g 1 6005 4 1 1 1 42 TYR 4 A . 42 TYR o 1 6005 4 1 1 1 43 LYS 4 A . 43 LYS k 1 6005 4 1 1 1 44 THR 4 A . 44 THR b 1 6005 4 1 1 1 45 GLU 4 A . 45 GLU c 1 6005 4 1 1 1 46 LEU 4 A . 46 LEU c 1 6005 4 1 1 1 47 CYS 4 A . 47 CYS f 1 6005 4 1 1 1 48 ARG 4 A . 48 ARG k 1 6005 4 1 1 1 49 THR 4 A . 49 THR l 1 6005 4 1 1 1 50 PHE 4 A . 50 PHE m 1 6005 4 1 1 1 51 HIS 4 A . 51 HIS m 1 6005 4 1 1 1 52 THR 4 A . 52 THR n 1 6005 4 1 1 1 53 ILE 4 A . 53 ILE o 1 6005 4 1 1 1 54 GLY 4 A . 54 GLY p 1 6005 4 1 1 1 55 PHE 4 A . 55 PHE a 1 6005 4 1 1 1 56 CYS 4 A . 56 CYS f 1 6005 4 1 1 1 57 PRO 4 A . 57 PRO k 1 6005 4 1 1 1 58 TYR 4 A . 58 TYR l 1 6005 4 1 1 1 59 GLY 4 A . 59 GLY m 1 6005 4 1 1 1 60 PRO 4 A . 60 PRO m 1 6005 4 1 1 1 61 ARG 4 A . 61 ARG b 1 6005 4 1 1 1 62 CYS 4 A . 62 CYS c 1 6005 4 1 1 1 63 HIS 4 A . 63 HIS b 1 6005 4 1 1 1 64 PHE 4 A . 64 PHE d 1 6005 4 1 1 1 65 ILE 4 A . 65 ILE f 1 6005 4 1 1 1 66 HIS 4 A . 66 HIS b 1 6005 4 1 1 1 67 ASN 4 A . 67 ASN f 1 6005 4 1 1 1 68 ALA 4 A . 68 ALA b 1 6005 4 1 1 1 69 ASP 4 A . 69 ASP . 1 6005 4 1 1 1 70 GLU 4 A . 70 GLU . 1 6005 4 stop_ save_ save_PB_annotation_5 _PB_list.Sf_category PB_list _PB_list.ID 5 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmlcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 5 A . 1 SER . 1 6005 5 1 1 1 2 THR 5 A . 2 THR . 1 6005 5 1 1 1 3 ARG 5 A . 3 ARG g 1 6005 5 1 1 1 4 TYR 5 A . 4 TYR o 1 6005 5 1 1 1 5 LYS 5 A . 5 LYS k 1 6005 5 1 1 1 6 THR 5 A . 6 THR b 1 6005 5 1 1 1 7 GLU 5 A . 7 GLU c 1 6005 5 1 1 1 8 LEU 5 A . 8 LEU c 1 6005 5 1 1 1 9 CYS 5 A . 9 CYS f 1 6005 5 1 1 1 10 ARG 5 A . 10 ARG k 1 6005 5 1 1 1 11 PRO 5 A . 11 PRO l 1 6005 5 1 1 1 12 PHE 5 A . 12 PHE m 1 6005 5 1 1 1 13 GLU 5 A . 13 GLU m 1 6005 5 1 1 1 14 GLU 5 A . 14 GLU n 1 6005 5 1 1 1 15 SER 5 A . 15 SER o 1 6005 5 1 1 1 16 GLY 5 A . 16 GLY p 1 6005 5 1 1 1 17 THR 5 A . 17 THR a 1 6005 5 1 1 1 18 CYS 5 A . 18 CYS f 1 6005 5 1 1 1 19 LYS 5 A . 19 LYS k 1 6005 5 1 1 1 20 TYR 5 A . 20 TYR l 1 6005 5 1 1 1 21 GLY 5 A . 21 GLY m 1 6005 5 1 1 1 22 GLU 5 A . 22 GLU m 1 6005 5 1 1 1 23 LYS 5 A . 23 LYS l 1 6005 5 1 1 1 24 CYS 5 A . 24 CYS c 1 6005 5 1 1 1 25 GLN 5 A . 25 GLN b 1 6005 5 1 1 1 26 PHE 5 A . 26 PHE d 1 6005 5 1 1 1 27 ALA 5 A . 27 ALA f 1 6005 5 1 1 1 28 HIS 5 A . 28 HIS b 1 6005 5 1 1 1 29 GLY 5 A . 29 GLY f 1 6005 5 1 1 1 30 PHE 5 A . 30 PHE k 1 6005 5 1 1 1 31 HIS 5 A . 31 HIS l 1 6005 5 1 1 1 32 GLU 5 A . 32 GLU p 1 6005 5 1 1 1 33 LEU 5 A . 33 LEU c 1 6005 5 1 1 1 34 ARG 5 A . 34 ARG c 1 6005 5 1 1 1 35 SER 5 A . 35 SER d 1 6005 5 1 1 1 36 LEU 5 A . 36 LEU d 1 6005 5 1 1 1 37 THR 5 A . 37 THR d 1 6005 5 1 1 1 38 ARG 5 A . 38 ARG d 1 6005 5 1 1 1 39 HIS 5 A . 39 HIS f 1 6005 5 1 1 1 40 PRO 5 A . 40 PRO k 1 6005 5 1 1 1 41 LYS 5 A . 41 LYS g 1 6005 5 1 1 1 42 TYR 5 A . 42 TYR o 1 6005 5 1 1 1 43 LYS 5 A . 43 LYS k 1 6005 5 1 1 1 44 THR 5 A . 44 THR b 1 6005 5 1 1 1 45 GLU 5 A . 45 GLU c 1 6005 5 1 1 1 46 LEU 5 A . 46 LEU c 1 6005 5 1 1 1 47 CYS 5 A . 47 CYS f 1 6005 5 1 1 1 48 ARG 5 A . 48 ARG k 1 6005 5 1 1 1 49 THR 5 A . 49 THR l 1 6005 5 1 1 1 50 PHE 5 A . 50 PHE m 1 6005 5 1 1 1 51 HIS 5 A . 51 HIS m 1 6005 5 1 1 1 52 THR 5 A . 52 THR n 1 6005 5 1 1 1 53 ILE 5 A . 53 ILE o 1 6005 5 1 1 1 54 GLY 5 A . 54 GLY p 1 6005 5 1 1 1 55 PHE 5 A . 55 PHE a 1 6005 5 1 1 1 56 CYS 5 A . 56 CYS f 1 6005 5 1 1 1 57 PRO 5 A . 57 PRO k 1 6005 5 1 1 1 58 TYR 5 A . 58 TYR l 1 6005 5 1 1 1 59 GLY 5 A . 59 GLY m 1 6005 5 1 1 1 60 PRO 5 A . 60 PRO m 1 6005 5 1 1 1 61 ARG 5 A . 61 ARG l 1 6005 5 1 1 1 62 CYS 5 A . 62 CYS c 1 6005 5 1 1 1 63 HIS 5 A . 63 HIS b 1 6005 5 1 1 1 64 PHE 5 A . 64 PHE d 1 6005 5 1 1 1 65 ILE 5 A . 65 ILE f 1 6005 5 1 1 1 66 HIS 5 A . 66 HIS b 1 6005 5 1 1 1 67 ASN 5 A . 67 ASN d 1 6005 5 1 1 1 68 ALA 5 A . 68 ALA c 1 6005 5 1 1 1 69 ASP 5 A . 69 ASP . 1 6005 5 1 1 1 70 GLU 5 A . 70 GLU . 1 6005 5 stop_ save_ save_PB_annotation_6 _PB_list.Sf_category PB_list _PB_list.ID 6 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfkloccddddfkgokbccfklmmnopafklmmlcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 6 A . 1 SER . 1 6005 6 1 1 1 2 THR 6 A . 2 THR . 1 6005 6 1 1 1 3 ARG 6 A . 3 ARG g 1 6005 6 1 1 1 4 TYR 6 A . 4 TYR o 1 6005 6 1 1 1 5 LYS 6 A . 5 LYS k 1 6005 6 1 1 1 6 THR 6 A . 6 THR b 1 6005 6 1 1 1 7 GLU 6 A . 7 GLU c 1 6005 6 1 1 1 8 LEU 6 A . 8 LEU c 1 6005 6 1 1 1 9 CYS 6 A . 9 CYS f 1 6005 6 1 1 1 10 ARG 6 A . 10 ARG k 1 6005 6 1 1 1 11 PRO 6 A . 11 PRO l 1 6005 6 1 1 1 12 PHE 6 A . 12 PHE m 1 6005 6 1 1 1 13 GLU 6 A . 13 GLU m 1 6005 6 1 1 1 14 GLU 6 A . 14 GLU n 1 6005 6 1 1 1 15 SER 6 A . 15 SER o 1 6005 6 1 1 1 16 GLY 6 A . 16 GLY p 1 6005 6 1 1 1 17 THR 6 A . 17 THR a 1 6005 6 1 1 1 18 CYS 6 A . 18 CYS f 1 6005 6 1 1 1 19 LYS 6 A . 19 LYS k 1 6005 6 1 1 1 20 TYR 6 A . 20 TYR l 1 6005 6 1 1 1 21 GLY 6 A . 21 GLY m 1 6005 6 1 1 1 22 GLU 6 A . 22 GLU m 1 6005 6 1 1 1 23 LYS 6 A . 23 LYS l 1 6005 6 1 1 1 24 CYS 6 A . 24 CYS c 1 6005 6 1 1 1 25 GLN 6 A . 25 GLN b 1 6005 6 1 1 1 26 PHE 6 A . 26 PHE d 1 6005 6 1 1 1 27 ALA 6 A . 27 ALA f 1 6005 6 1 1 1 28 HIS 6 A . 28 HIS b 1 6005 6 1 1 1 29 GLY 6 A . 29 GLY f 1 6005 6 1 1 1 30 PHE 6 A . 30 PHE k 1 6005 6 1 1 1 31 HIS 6 A . 31 HIS l 1 6005 6 1 1 1 32 GLU 6 A . 32 GLU o 1 6005 6 1 1 1 33 LEU 6 A . 33 LEU c 1 6005 6 1 1 1 34 ARG 6 A . 34 ARG c 1 6005 6 1 1 1 35 SER 6 A . 35 SER d 1 6005 6 1 1 1 36 LEU 6 A . 36 LEU d 1 6005 6 1 1 1 37 THR 6 A . 37 THR d 1 6005 6 1 1 1 38 ARG 6 A . 38 ARG d 1 6005 6 1 1 1 39 HIS 6 A . 39 HIS f 1 6005 6 1 1 1 40 PRO 6 A . 40 PRO k 1 6005 6 1 1 1 41 LYS 6 A . 41 LYS g 1 6005 6 1 1 1 42 TYR 6 A . 42 TYR o 1 6005 6 1 1 1 43 LYS 6 A . 43 LYS k 1 6005 6 1 1 1 44 THR 6 A . 44 THR b 1 6005 6 1 1 1 45 GLU 6 A . 45 GLU c 1 6005 6 1 1 1 46 LEU 6 A . 46 LEU c 1 6005 6 1 1 1 47 CYS 6 A . 47 CYS f 1 6005 6 1 1 1 48 ARG 6 A . 48 ARG k 1 6005 6 1 1 1 49 THR 6 A . 49 THR l 1 6005 6 1 1 1 50 PHE 6 A . 50 PHE m 1 6005 6 1 1 1 51 HIS 6 A . 51 HIS m 1 6005 6 1 1 1 52 THR 6 A . 52 THR n 1 6005 6 1 1 1 53 ILE 6 A . 53 ILE o 1 6005 6 1 1 1 54 GLY 6 A . 54 GLY p 1 6005 6 1 1 1 55 PHE 6 A . 55 PHE a 1 6005 6 1 1 1 56 CYS 6 A . 56 CYS f 1 6005 6 1 1 1 57 PRO 6 A . 57 PRO k 1 6005 6 1 1 1 58 TYR 6 A . 58 TYR l 1 6005 6 1 1 1 59 GLY 6 A . 59 GLY m 1 6005 6 1 1 1 60 PRO 6 A . 60 PRO m 1 6005 6 1 1 1 61 ARG 6 A . 61 ARG l 1 6005 6 1 1 1 62 CYS 6 A . 62 CYS c 1 6005 6 1 1 1 63 HIS 6 A . 63 HIS b 1 6005 6 1 1 1 64 PHE 6 A . 64 PHE d 1 6005 6 1 1 1 65 ILE 6 A . 65 ILE f 1 6005 6 1 1 1 66 HIS 6 A . 66 HIS b 1 6005 6 1 1 1 67 ASN 6 A . 67 ASN d 1 6005 6 1 1 1 68 ALA 6 A . 68 ALA c 1 6005 6 1 1 1 69 ASP 6 A . 69 ASP . 1 6005 6 1 1 1 70 GLU 6 A . 70 GLU . 1 6005 6 stop_ save_ save_PB_annotation_7 _PB_list.Sf_category PB_list _PB_list.ID 7 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmlcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 7 A . 1 SER . 1 6005 7 1 1 1 2 THR 7 A . 2 THR . 1 6005 7 1 1 1 3 ARG 7 A . 3 ARG g 1 6005 7 1 1 1 4 TYR 7 A . 4 TYR o 1 6005 7 1 1 1 5 LYS 7 A . 5 LYS k 1 6005 7 1 1 1 6 THR 7 A . 6 THR b 1 6005 7 1 1 1 7 GLU 7 A . 7 GLU c 1 6005 7 1 1 1 8 LEU 7 A . 8 LEU c 1 6005 7 1 1 1 9 CYS 7 A . 9 CYS f 1 6005 7 1 1 1 10 ARG 7 A . 10 ARG k 1 6005 7 1 1 1 11 PRO 7 A . 11 PRO l 1 6005 7 1 1 1 12 PHE 7 A . 12 PHE m 1 6005 7 1 1 1 13 GLU 7 A . 13 GLU m 1 6005 7 1 1 1 14 GLU 7 A . 14 GLU n 1 6005 7 1 1 1 15 SER 7 A . 15 SER o 1 6005 7 1 1 1 16 GLY 7 A . 16 GLY p 1 6005 7 1 1 1 17 THR 7 A . 17 THR a 1 6005 7 1 1 1 18 CYS 7 A . 18 CYS f 1 6005 7 1 1 1 19 LYS 7 A . 19 LYS k 1 6005 7 1 1 1 20 TYR 7 A . 20 TYR l 1 6005 7 1 1 1 21 GLY 7 A . 21 GLY m 1 6005 7 1 1 1 22 GLU 7 A . 22 GLU m 1 6005 7 1 1 1 23 LYS 7 A . 23 LYS l 1 6005 7 1 1 1 24 CYS 7 A . 24 CYS c 1 6005 7 1 1 1 25 GLN 7 A . 25 GLN b 1 6005 7 1 1 1 26 PHE 7 A . 26 PHE d 1 6005 7 1 1 1 27 ALA 7 A . 27 ALA f 1 6005 7 1 1 1 28 HIS 7 A . 28 HIS b 1 6005 7 1 1 1 29 GLY 7 A . 29 GLY f 1 6005 7 1 1 1 30 PHE 7 A . 30 PHE k 1 6005 7 1 1 1 31 HIS 7 A . 31 HIS l 1 6005 7 1 1 1 32 GLU 7 A . 32 GLU p 1 6005 7 1 1 1 33 LEU 7 A . 33 LEU c 1 6005 7 1 1 1 34 ARG 7 A . 34 ARG c 1 6005 7 1 1 1 35 SER 7 A . 35 SER d 1 6005 7 1 1 1 36 LEU 7 A . 36 LEU d 1 6005 7 1 1 1 37 THR 7 A . 37 THR d 1 6005 7 1 1 1 38 ARG 7 A . 38 ARG d 1 6005 7 1 1 1 39 HIS 7 A . 39 HIS f 1 6005 7 1 1 1 40 PRO 7 A . 40 PRO k 1 6005 7 1 1 1 41 LYS 7 A . 41 LYS g 1 6005 7 1 1 1 42 TYR 7 A . 42 TYR o 1 6005 7 1 1 1 43 LYS 7 A . 43 LYS k 1 6005 7 1 1 1 44 THR 7 A . 44 THR b 1 6005 7 1 1 1 45 GLU 7 A . 45 GLU c 1 6005 7 1 1 1 46 LEU 7 A . 46 LEU c 1 6005 7 1 1 1 47 CYS 7 A . 47 CYS f 1 6005 7 1 1 1 48 ARG 7 A . 48 ARG k 1 6005 7 1 1 1 49 THR 7 A . 49 THR l 1 6005 7 1 1 1 50 PHE 7 A . 50 PHE m 1 6005 7 1 1 1 51 HIS 7 A . 51 HIS m 1 6005 7 1 1 1 52 THR 7 A . 52 THR n 1 6005 7 1 1 1 53 ILE 7 A . 53 ILE o 1 6005 7 1 1 1 54 GLY 7 A . 54 GLY p 1 6005 7 1 1 1 55 PHE 7 A . 55 PHE a 1 6005 7 1 1 1 56 CYS 7 A . 56 CYS f 1 6005 7 1 1 1 57 PRO 7 A . 57 PRO k 1 6005 7 1 1 1 58 TYR 7 A . 58 TYR l 1 6005 7 1 1 1 59 GLY 7 A . 59 GLY m 1 6005 7 1 1 1 60 PRO 7 A . 60 PRO m 1 6005 7 1 1 1 61 ARG 7 A . 61 ARG l 1 6005 7 1 1 1 62 CYS 7 A . 62 CYS c 1 6005 7 1 1 1 63 HIS 7 A . 63 HIS b 1 6005 7 1 1 1 64 PHE 7 A . 64 PHE d 1 6005 7 1 1 1 65 ILE 7 A . 65 ILE f 1 6005 7 1 1 1 66 HIS 7 A . 66 HIS b 1 6005 7 1 1 1 67 ASN 7 A . 67 ASN d 1 6005 7 1 1 1 68 ALA 7 A . 68 ALA c 1 6005 7 1 1 1 69 ASP 7 A . 69 ASP . 1 6005 7 1 1 1 70 GLU 7 A . 70 GLU . 1 6005 7 stop_ save_ save_PB_annotation_8 _PB_list.Sf_category PB_list _PB_list.ID 8 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzehkbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmlcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 8 A . 1 SER . 1 6005 8 1 1 1 2 THR 8 A . 2 THR . 1 6005 8 1 1 1 3 ARG 8 A . 3 ARG e 1 6005 8 1 1 1 4 TYR 8 A . 4 TYR h 1 6005 8 1 1 1 5 LYS 8 A . 5 LYS k 1 6005 8 1 1 1 6 THR 8 A . 6 THR b 1 6005 8 1 1 1 7 GLU 8 A . 7 GLU c 1 6005 8 1 1 1 8 LEU 8 A . 8 LEU c 1 6005 8 1 1 1 9 CYS 8 A . 9 CYS f 1 6005 8 1 1 1 10 ARG 8 A . 10 ARG k 1 6005 8 1 1 1 11 PRO 8 A . 11 PRO l 1 6005 8 1 1 1 12 PHE 8 A . 12 PHE m 1 6005 8 1 1 1 13 GLU 8 A . 13 GLU m 1 6005 8 1 1 1 14 GLU 8 A . 14 GLU n 1 6005 8 1 1 1 15 SER 8 A . 15 SER o 1 6005 8 1 1 1 16 GLY 8 A . 16 GLY p 1 6005 8 1 1 1 17 THR 8 A . 17 THR a 1 6005 8 1 1 1 18 CYS 8 A . 18 CYS f 1 6005 8 1 1 1 19 LYS 8 A . 19 LYS k 1 6005 8 1 1 1 20 TYR 8 A . 20 TYR l 1 6005 8 1 1 1 21 GLY 8 A . 21 GLY m 1 6005 8 1 1 1 22 GLU 8 A . 22 GLU m 1 6005 8 1 1 1 23 LYS 8 A . 23 LYS l 1 6005 8 1 1 1 24 CYS 8 A . 24 CYS c 1 6005 8 1 1 1 25 GLN 8 A . 25 GLN b 1 6005 8 1 1 1 26 PHE 8 A . 26 PHE d 1 6005 8 1 1 1 27 ALA 8 A . 27 ALA f 1 6005 8 1 1 1 28 HIS 8 A . 28 HIS b 1 6005 8 1 1 1 29 GLY 8 A . 29 GLY f 1 6005 8 1 1 1 30 PHE 8 A . 30 PHE k 1 6005 8 1 1 1 31 HIS 8 A . 31 HIS l 1 6005 8 1 1 1 32 GLU 8 A . 32 GLU p 1 6005 8 1 1 1 33 LEU 8 A . 33 LEU c 1 6005 8 1 1 1 34 ARG 8 A . 34 ARG c 1 6005 8 1 1 1 35 SER 8 A . 35 SER d 1 6005 8 1 1 1 36 LEU 8 A . 36 LEU d 1 6005 8 1 1 1 37 THR 8 A . 37 THR d 1 6005 8 1 1 1 38 ARG 8 A . 38 ARG d 1 6005 8 1 1 1 39 HIS 8 A . 39 HIS f 1 6005 8 1 1 1 40 PRO 8 A . 40 PRO k 1 6005 8 1 1 1 41 LYS 8 A . 41 LYS g 1 6005 8 1 1 1 42 TYR 8 A . 42 TYR o 1 6005 8 1 1 1 43 LYS 8 A . 43 LYS k 1 6005 8 1 1 1 44 THR 8 A . 44 THR b 1 6005 8 1 1 1 45 GLU 8 A . 45 GLU c 1 6005 8 1 1 1 46 LEU 8 A . 46 LEU c 1 6005 8 1 1 1 47 CYS 8 A . 47 CYS f 1 6005 8 1 1 1 48 ARG 8 A . 48 ARG k 1 6005 8 1 1 1 49 THR 8 A . 49 THR l 1 6005 8 1 1 1 50 PHE 8 A . 50 PHE m 1 6005 8 1 1 1 51 HIS 8 A . 51 HIS m 1 6005 8 1 1 1 52 THR 8 A . 52 THR n 1 6005 8 1 1 1 53 ILE 8 A . 53 ILE o 1 6005 8 1 1 1 54 GLY 8 A . 54 GLY p 1 6005 8 1 1 1 55 PHE 8 A . 55 PHE a 1 6005 8 1 1 1 56 CYS 8 A . 56 CYS f 1 6005 8 1 1 1 57 PRO 8 A . 57 PRO k 1 6005 8 1 1 1 58 TYR 8 A . 58 TYR l 1 6005 8 1 1 1 59 GLY 8 A . 59 GLY m 1 6005 8 1 1 1 60 PRO 8 A . 60 PRO m 1 6005 8 1 1 1 61 ARG 8 A . 61 ARG l 1 6005 8 1 1 1 62 CYS 8 A . 62 CYS c 1 6005 8 1 1 1 63 HIS 8 A . 63 HIS b 1 6005 8 1 1 1 64 PHE 8 A . 64 PHE d 1 6005 8 1 1 1 65 ILE 8 A . 65 ILE f 1 6005 8 1 1 1 66 HIS 8 A . 66 HIS b 1 6005 8 1 1 1 67 ASN 8 A . 67 ASN f 1 6005 8 1 1 1 68 ALA 8 A . 68 ALA b 1 6005 8 1 1 1 69 ASP 8 A . 69 ASP . 1 6005 8 1 1 1 70 GLU 8 A . 70 GLU . 1 6005 8 stop_ save_ save_PB_annotation_9 _PB_list.Sf_category PB_list _PB_list.ID 9 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokaccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 9 A . 1 SER . 1 6005 9 1 1 1 2 THR 9 A . 2 THR . 1 6005 9 1 1 1 3 ARG 9 A . 3 ARG g 1 6005 9 1 1 1 4 TYR 9 A . 4 TYR o 1 6005 9 1 1 1 5 LYS 9 A . 5 LYS k 1 6005 9 1 1 1 6 THR 9 A . 6 THR a 1 6005 9 1 1 1 7 GLU 9 A . 7 GLU c 1 6005 9 1 1 1 8 LEU 9 A . 8 LEU c 1 6005 9 1 1 1 9 CYS 9 A . 9 CYS f 1 6005 9 1 1 1 10 ARG 9 A . 10 ARG k 1 6005 9 1 1 1 11 PRO 9 A . 11 PRO l 1 6005 9 1 1 1 12 PHE 9 A . 12 PHE m 1 6005 9 1 1 1 13 GLU 9 A . 13 GLU m 1 6005 9 1 1 1 14 GLU 9 A . 14 GLU n 1 6005 9 1 1 1 15 SER 9 A . 15 SER o 1 6005 9 1 1 1 16 GLY 9 A . 16 GLY p 1 6005 9 1 1 1 17 THR 9 A . 17 THR a 1 6005 9 1 1 1 18 CYS 9 A . 18 CYS f 1 6005 9 1 1 1 19 LYS 9 A . 19 LYS k 1 6005 9 1 1 1 20 TYR 9 A . 20 TYR l 1 6005 9 1 1 1 21 GLY 9 A . 21 GLY m 1 6005 9 1 1 1 22 GLU 9 A . 22 GLU m 1 6005 9 1 1 1 23 LYS 9 A . 23 LYS l 1 6005 9 1 1 1 24 CYS 9 A . 24 CYS c 1 6005 9 1 1 1 25 GLN 9 A . 25 GLN b 1 6005 9 1 1 1 26 PHE 9 A . 26 PHE d 1 6005 9 1 1 1 27 ALA 9 A . 27 ALA f 1 6005 9 1 1 1 28 HIS 9 A . 28 HIS b 1 6005 9 1 1 1 29 GLY 9 A . 29 GLY f 1 6005 9 1 1 1 30 PHE 9 A . 30 PHE k 1 6005 9 1 1 1 31 HIS 9 A . 31 HIS l 1 6005 9 1 1 1 32 GLU 9 A . 32 GLU p 1 6005 9 1 1 1 33 LEU 9 A . 33 LEU c 1 6005 9 1 1 1 34 ARG 9 A . 34 ARG c 1 6005 9 1 1 1 35 SER 9 A . 35 SER d 1 6005 9 1 1 1 36 LEU 9 A . 36 LEU d 1 6005 9 1 1 1 37 THR 9 A . 37 THR d 1 6005 9 1 1 1 38 ARG 9 A . 38 ARG d 1 6005 9 1 1 1 39 HIS 9 A . 39 HIS f 1 6005 9 1 1 1 40 PRO 9 A . 40 PRO k 1 6005 9 1 1 1 41 LYS 9 A . 41 LYS g 1 6005 9 1 1 1 42 TYR 9 A . 42 TYR o 1 6005 9 1 1 1 43 LYS 9 A . 43 LYS k 1 6005 9 1 1 1 44 THR 9 A . 44 THR b 1 6005 9 1 1 1 45 GLU 9 A . 45 GLU c 1 6005 9 1 1 1 46 LEU 9 A . 46 LEU c 1 6005 9 1 1 1 47 CYS 9 A . 47 CYS f 1 6005 9 1 1 1 48 ARG 9 A . 48 ARG k 1 6005 9 1 1 1 49 THR 9 A . 49 THR l 1 6005 9 1 1 1 50 PHE 9 A . 50 PHE m 1 6005 9 1 1 1 51 HIS 9 A . 51 HIS m 1 6005 9 1 1 1 52 THR 9 A . 52 THR n 1 6005 9 1 1 1 53 ILE 9 A . 53 ILE o 1 6005 9 1 1 1 54 GLY 9 A . 54 GLY p 1 6005 9 1 1 1 55 PHE 9 A . 55 PHE a 1 6005 9 1 1 1 56 CYS 9 A . 56 CYS f 1 6005 9 1 1 1 57 PRO 9 A . 57 PRO k 1 6005 9 1 1 1 58 TYR 9 A . 58 TYR l 1 6005 9 1 1 1 59 GLY 9 A . 59 GLY m 1 6005 9 1 1 1 60 PRO 9 A . 60 PRO m 1 6005 9 1 1 1 61 ARG 9 A . 61 ARG b 1 6005 9 1 1 1 62 CYS 9 A . 62 CYS c 1 6005 9 1 1 1 63 HIS 9 A . 63 HIS b 1 6005 9 1 1 1 64 PHE 9 A . 64 PHE d 1 6005 9 1 1 1 65 ILE 9 A . 65 ILE f 1 6005 9 1 1 1 66 HIS 9 A . 66 HIS b 1 6005 9 1 1 1 67 ASN 9 A . 67 ASN f 1 6005 9 1 1 1 68 ALA 9 A . 68 ALA b 1 6005 9 1 1 1 69 ASP 9 A . 69 ASP . 1 6005 9 1 1 1 70 GLU 9 A . 70 GLU . 1 6005 9 stop_ save_ save_PB_annotation_10 _PB_list.Sf_category PB_list _PB_list.ID 10 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokaccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 10 A . 1 SER . 1 6005 10 1 1 1 2 THR 10 A . 2 THR . 1 6005 10 1 1 1 3 ARG 10 A . 3 ARG g 1 6005 10 1 1 1 4 TYR 10 A . 4 TYR o 1 6005 10 1 1 1 5 LYS 10 A . 5 LYS k 1 6005 10 1 1 1 6 THR 10 A . 6 THR a 1 6005 10 1 1 1 7 GLU 10 A . 7 GLU c 1 6005 10 1 1 1 8 LEU 10 A . 8 LEU c 1 6005 10 1 1 1 9 CYS 10 A . 9 CYS f 1 6005 10 1 1 1 10 ARG 10 A . 10 ARG k 1 6005 10 1 1 1 11 PRO 10 A . 11 PRO l 1 6005 10 1 1 1 12 PHE 10 A . 12 PHE m 1 6005 10 1 1 1 13 GLU 10 A . 13 GLU m 1 6005 10 1 1 1 14 GLU 10 A . 14 GLU n 1 6005 10 1 1 1 15 SER 10 A . 15 SER o 1 6005 10 1 1 1 16 GLY 10 A . 16 GLY p 1 6005 10 1 1 1 17 THR 10 A . 17 THR a 1 6005 10 1 1 1 18 CYS 10 A . 18 CYS f 1 6005 10 1 1 1 19 LYS 10 A . 19 LYS k 1 6005 10 1 1 1 20 TYR 10 A . 20 TYR l 1 6005 10 1 1 1 21 GLY 10 A . 21 GLY m 1 6005 10 1 1 1 22 GLU 10 A . 22 GLU m 1 6005 10 1 1 1 23 LYS 10 A . 23 LYS l 1 6005 10 1 1 1 24 CYS 10 A . 24 CYS c 1 6005 10 1 1 1 25 GLN 10 A . 25 GLN b 1 6005 10 1 1 1 26 PHE 10 A . 26 PHE d 1 6005 10 1 1 1 27 ALA 10 A . 27 ALA f 1 6005 10 1 1 1 28 HIS 10 A . 28 HIS b 1 6005 10 1 1 1 29 GLY 10 A . 29 GLY f 1 6005 10 1 1 1 30 PHE 10 A . 30 PHE k 1 6005 10 1 1 1 31 HIS 10 A . 31 HIS l 1 6005 10 1 1 1 32 GLU 10 A . 32 GLU p 1 6005 10 1 1 1 33 LEU 10 A . 33 LEU c 1 6005 10 1 1 1 34 ARG 10 A . 34 ARG c 1 6005 10 1 1 1 35 SER 10 A . 35 SER d 1 6005 10 1 1 1 36 LEU 10 A . 36 LEU d 1 6005 10 1 1 1 37 THR 10 A . 37 THR d 1 6005 10 1 1 1 38 ARG 10 A . 38 ARG d 1 6005 10 1 1 1 39 HIS 10 A . 39 HIS f 1 6005 10 1 1 1 40 PRO 10 A . 40 PRO k 1 6005 10 1 1 1 41 LYS 10 A . 41 LYS g 1 6005 10 1 1 1 42 TYR 10 A . 42 TYR o 1 6005 10 1 1 1 43 LYS 10 A . 43 LYS k 1 6005 10 1 1 1 44 THR 10 A . 44 THR b 1 6005 10 1 1 1 45 GLU 10 A . 45 GLU c 1 6005 10 1 1 1 46 LEU 10 A . 46 LEU c 1 6005 10 1 1 1 47 CYS 10 A . 47 CYS f 1 6005 10 1 1 1 48 ARG 10 A . 48 ARG k 1 6005 10 1 1 1 49 THR 10 A . 49 THR l 1 6005 10 1 1 1 50 PHE 10 A . 50 PHE m 1 6005 10 1 1 1 51 HIS 10 A . 51 HIS m 1 6005 10 1 1 1 52 THR 10 A . 52 THR n 1 6005 10 1 1 1 53 ILE 10 A . 53 ILE o 1 6005 10 1 1 1 54 GLY 10 A . 54 GLY p 1 6005 10 1 1 1 55 PHE 10 A . 55 PHE a 1 6005 10 1 1 1 56 CYS 10 A . 56 CYS f 1 6005 10 1 1 1 57 PRO 10 A . 57 PRO k 1 6005 10 1 1 1 58 TYR 10 A . 58 TYR l 1 6005 10 1 1 1 59 GLY 10 A . 59 GLY m 1 6005 10 1 1 1 60 PRO 10 A . 60 PRO m 1 6005 10 1 1 1 61 ARG 10 A . 61 ARG b 1 6005 10 1 1 1 62 CYS 10 A . 62 CYS c 1 6005 10 1 1 1 63 HIS 10 A . 63 HIS b 1 6005 10 1 1 1 64 PHE 10 A . 64 PHE d 1 6005 10 1 1 1 65 ILE 10 A . 65 ILE f 1 6005 10 1 1 1 66 HIS 10 A . 66 HIS b 1 6005 10 1 1 1 67 ASN 10 A . 67 ASN f 1 6005 10 1 1 1 68 ALA 10 A . 68 ALA b 1 6005 10 1 1 1 69 ASP 10 A . 69 ASP . 1 6005 10 1 1 1 70 GLU 10 A . 70 GLU . 1 6005 10 stop_ save_ save_PB_annotation_11 _PB_list.Sf_category PB_list _PB_list.ID 11 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokaccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 11 A . 1 SER . 1 6005 11 1 1 1 2 THR 11 A . 2 THR . 1 6005 11 1 1 1 3 ARG 11 A . 3 ARG g 1 6005 11 1 1 1 4 TYR 11 A . 4 TYR o 1 6005 11 1 1 1 5 LYS 11 A . 5 LYS k 1 6005 11 1 1 1 6 THR 11 A . 6 THR a 1 6005 11 1 1 1 7 GLU 11 A . 7 GLU c 1 6005 11 1 1 1 8 LEU 11 A . 8 LEU c 1 6005 11 1 1 1 9 CYS 11 A . 9 CYS f 1 6005 11 1 1 1 10 ARG 11 A . 10 ARG k 1 6005 11 1 1 1 11 PRO 11 A . 11 PRO l 1 6005 11 1 1 1 12 PHE 11 A . 12 PHE m 1 6005 11 1 1 1 13 GLU 11 A . 13 GLU m 1 6005 11 1 1 1 14 GLU 11 A . 14 GLU n 1 6005 11 1 1 1 15 SER 11 A . 15 SER o 1 6005 11 1 1 1 16 GLY 11 A . 16 GLY p 1 6005 11 1 1 1 17 THR 11 A . 17 THR a 1 6005 11 1 1 1 18 CYS 11 A . 18 CYS f 1 6005 11 1 1 1 19 LYS 11 A . 19 LYS k 1 6005 11 1 1 1 20 TYR 11 A . 20 TYR l 1 6005 11 1 1 1 21 GLY 11 A . 21 GLY m 1 6005 11 1 1 1 22 GLU 11 A . 22 GLU m 1 6005 11 1 1 1 23 LYS 11 A . 23 LYS l 1 6005 11 1 1 1 24 CYS 11 A . 24 CYS c 1 6005 11 1 1 1 25 GLN 11 A . 25 GLN b 1 6005 11 1 1 1 26 PHE 11 A . 26 PHE d 1 6005 11 1 1 1 27 ALA 11 A . 27 ALA f 1 6005 11 1 1 1 28 HIS 11 A . 28 HIS b 1 6005 11 1 1 1 29 GLY 11 A . 29 GLY f 1 6005 11 1 1 1 30 PHE 11 A . 30 PHE k 1 6005 11 1 1 1 31 HIS 11 A . 31 HIS l 1 6005 11 1 1 1 32 GLU 11 A . 32 GLU p 1 6005 11 1 1 1 33 LEU 11 A . 33 LEU c 1 6005 11 1 1 1 34 ARG 11 A . 34 ARG c 1 6005 11 1 1 1 35 SER 11 A . 35 SER d 1 6005 11 1 1 1 36 LEU 11 A . 36 LEU d 1 6005 11 1 1 1 37 THR 11 A . 37 THR d 1 6005 11 1 1 1 38 ARG 11 A . 38 ARG d 1 6005 11 1 1 1 39 HIS 11 A . 39 HIS f 1 6005 11 1 1 1 40 PRO 11 A . 40 PRO k 1 6005 11 1 1 1 41 LYS 11 A . 41 LYS g 1 6005 11 1 1 1 42 TYR 11 A . 42 TYR o 1 6005 11 1 1 1 43 LYS 11 A . 43 LYS k 1 6005 11 1 1 1 44 THR 11 A . 44 THR b 1 6005 11 1 1 1 45 GLU 11 A . 45 GLU c 1 6005 11 1 1 1 46 LEU 11 A . 46 LEU c 1 6005 11 1 1 1 47 CYS 11 A . 47 CYS f 1 6005 11 1 1 1 48 ARG 11 A . 48 ARG k 1 6005 11 1 1 1 49 THR 11 A . 49 THR l 1 6005 11 1 1 1 50 PHE 11 A . 50 PHE m 1 6005 11 1 1 1 51 HIS 11 A . 51 HIS m 1 6005 11 1 1 1 52 THR 11 A . 52 THR n 1 6005 11 1 1 1 53 ILE 11 A . 53 ILE o 1 6005 11 1 1 1 54 GLY 11 A . 54 GLY p 1 6005 11 1 1 1 55 PHE 11 A . 55 PHE a 1 6005 11 1 1 1 56 CYS 11 A . 56 CYS f 1 6005 11 1 1 1 57 PRO 11 A . 57 PRO k 1 6005 11 1 1 1 58 TYR 11 A . 58 TYR l 1 6005 11 1 1 1 59 GLY 11 A . 59 GLY m 1 6005 11 1 1 1 60 PRO 11 A . 60 PRO m 1 6005 11 1 1 1 61 ARG 11 A . 61 ARG b 1 6005 11 1 1 1 62 CYS 11 A . 62 CYS c 1 6005 11 1 1 1 63 HIS 11 A . 63 HIS b 1 6005 11 1 1 1 64 PHE 11 A . 64 PHE d 1 6005 11 1 1 1 65 ILE 11 A . 65 ILE f 1 6005 11 1 1 1 66 HIS 11 A . 66 HIS b 1 6005 11 1 1 1 67 ASN 11 A . 67 ASN f 1 6005 11 1 1 1 68 ALA 11 A . 68 ALA b 1 6005 11 1 1 1 69 ASP 11 A . 69 ASP . 1 6005 11 1 1 1 70 GLU 11 A . 70 GLU . 1 6005 11 stop_ save_ save_PB_annotation_12 _PB_list.Sf_category PB_list _PB_list.ID 12 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzehkbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 12 A . 1 SER . 1 6005 12 1 1 1 2 THR 12 A . 2 THR . 1 6005 12 1 1 1 3 ARG 12 A . 3 ARG e 1 6005 12 1 1 1 4 TYR 12 A . 4 TYR h 1 6005 12 1 1 1 5 LYS 12 A . 5 LYS k 1 6005 12 1 1 1 6 THR 12 A . 6 THR b 1 6005 12 1 1 1 7 GLU 12 A . 7 GLU c 1 6005 12 1 1 1 8 LEU 12 A . 8 LEU c 1 6005 12 1 1 1 9 CYS 12 A . 9 CYS f 1 6005 12 1 1 1 10 ARG 12 A . 10 ARG k 1 6005 12 1 1 1 11 PRO 12 A . 11 PRO l 1 6005 12 1 1 1 12 PHE 12 A . 12 PHE m 1 6005 12 1 1 1 13 GLU 12 A . 13 GLU m 1 6005 12 1 1 1 14 GLU 12 A . 14 GLU n 1 6005 12 1 1 1 15 SER 12 A . 15 SER o 1 6005 12 1 1 1 16 GLY 12 A . 16 GLY p 1 6005 12 1 1 1 17 THR 12 A . 17 THR a 1 6005 12 1 1 1 18 CYS 12 A . 18 CYS f 1 6005 12 1 1 1 19 LYS 12 A . 19 LYS k 1 6005 12 1 1 1 20 TYR 12 A . 20 TYR l 1 6005 12 1 1 1 21 GLY 12 A . 21 GLY m 1 6005 12 1 1 1 22 GLU 12 A . 22 GLU m 1 6005 12 1 1 1 23 LYS 12 A . 23 LYS l 1 6005 12 1 1 1 24 CYS 12 A . 24 CYS c 1 6005 12 1 1 1 25 GLN 12 A . 25 GLN b 1 6005 12 1 1 1 26 PHE 12 A . 26 PHE d 1 6005 12 1 1 1 27 ALA 12 A . 27 ALA f 1 6005 12 1 1 1 28 HIS 12 A . 28 HIS b 1 6005 12 1 1 1 29 GLY 12 A . 29 GLY f 1 6005 12 1 1 1 30 PHE 12 A . 30 PHE k 1 6005 12 1 1 1 31 HIS 12 A . 31 HIS l 1 6005 12 1 1 1 32 GLU 12 A . 32 GLU p 1 6005 12 1 1 1 33 LEU 12 A . 33 LEU c 1 6005 12 1 1 1 34 ARG 12 A . 34 ARG c 1 6005 12 1 1 1 35 SER 12 A . 35 SER d 1 6005 12 1 1 1 36 LEU 12 A . 36 LEU d 1 6005 12 1 1 1 37 THR 12 A . 37 THR d 1 6005 12 1 1 1 38 ARG 12 A . 38 ARG d 1 6005 12 1 1 1 39 HIS 12 A . 39 HIS f 1 6005 12 1 1 1 40 PRO 12 A . 40 PRO k 1 6005 12 1 1 1 41 LYS 12 A . 41 LYS g 1 6005 12 1 1 1 42 TYR 12 A . 42 TYR o 1 6005 12 1 1 1 43 LYS 12 A . 43 LYS k 1 6005 12 1 1 1 44 THR 12 A . 44 THR b 1 6005 12 1 1 1 45 GLU 12 A . 45 GLU c 1 6005 12 1 1 1 46 LEU 12 A . 46 LEU c 1 6005 12 1 1 1 47 CYS 12 A . 47 CYS f 1 6005 12 1 1 1 48 ARG 12 A . 48 ARG k 1 6005 12 1 1 1 49 THR 12 A . 49 THR l 1 6005 12 1 1 1 50 PHE 12 A . 50 PHE m 1 6005 12 1 1 1 51 HIS 12 A . 51 HIS m 1 6005 12 1 1 1 52 THR 12 A . 52 THR n 1 6005 12 1 1 1 53 ILE 12 A . 53 ILE o 1 6005 12 1 1 1 54 GLY 12 A . 54 GLY p 1 6005 12 1 1 1 55 PHE 12 A . 55 PHE a 1 6005 12 1 1 1 56 CYS 12 A . 56 CYS f 1 6005 12 1 1 1 57 PRO 12 A . 57 PRO k 1 6005 12 1 1 1 58 TYR 12 A . 58 TYR l 1 6005 12 1 1 1 59 GLY 12 A . 59 GLY m 1 6005 12 1 1 1 60 PRO 12 A . 60 PRO m 1 6005 12 1 1 1 61 ARG 12 A . 61 ARG b 1 6005 12 1 1 1 62 CYS 12 A . 62 CYS c 1 6005 12 1 1 1 63 HIS 12 A . 63 HIS b 1 6005 12 1 1 1 64 PHE 12 A . 64 PHE d 1 6005 12 1 1 1 65 ILE 12 A . 65 ILE f 1 6005 12 1 1 1 66 HIS 12 A . 66 HIS b 1 6005 12 1 1 1 67 ASN 12 A . 67 ASN d 1 6005 12 1 1 1 68 ALA 12 A . 68 ALA c 1 6005 12 1 1 1 69 ASP 12 A . 69 ASP . 1 6005 12 1 1 1 70 GLU 12 A . 70 GLU . 1 6005 12 stop_ save_ save_PB_annotation_13 _PB_list.Sf_category PB_list _PB_list.ID 13 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 13 A . 1 SER . 1 6005 13 1 1 1 2 THR 13 A . 2 THR . 1 6005 13 1 1 1 3 ARG 13 A . 3 ARG g 1 6005 13 1 1 1 4 TYR 13 A . 4 TYR o 1 6005 13 1 1 1 5 LYS 13 A . 5 LYS k 1 6005 13 1 1 1 6 THR 13 A . 6 THR b 1 6005 13 1 1 1 7 GLU 13 A . 7 GLU c 1 6005 13 1 1 1 8 LEU 13 A . 8 LEU c 1 6005 13 1 1 1 9 CYS 13 A . 9 CYS f 1 6005 13 1 1 1 10 ARG 13 A . 10 ARG k 1 6005 13 1 1 1 11 PRO 13 A . 11 PRO l 1 6005 13 1 1 1 12 PHE 13 A . 12 PHE m 1 6005 13 1 1 1 13 GLU 13 A . 13 GLU m 1 6005 13 1 1 1 14 GLU 13 A . 14 GLU n 1 6005 13 1 1 1 15 SER 13 A . 15 SER o 1 6005 13 1 1 1 16 GLY 13 A . 16 GLY p 1 6005 13 1 1 1 17 THR 13 A . 17 THR a 1 6005 13 1 1 1 18 CYS 13 A . 18 CYS f 1 6005 13 1 1 1 19 LYS 13 A . 19 LYS k 1 6005 13 1 1 1 20 TYR 13 A . 20 TYR l 1 6005 13 1 1 1 21 GLY 13 A . 21 GLY m 1 6005 13 1 1 1 22 GLU 13 A . 22 GLU m 1 6005 13 1 1 1 23 LYS 13 A . 23 LYS l 1 6005 13 1 1 1 24 CYS 13 A . 24 CYS c 1 6005 13 1 1 1 25 GLN 13 A . 25 GLN b 1 6005 13 1 1 1 26 PHE 13 A . 26 PHE d 1 6005 13 1 1 1 27 ALA 13 A . 27 ALA f 1 6005 13 1 1 1 28 HIS 13 A . 28 HIS b 1 6005 13 1 1 1 29 GLY 13 A . 29 GLY f 1 6005 13 1 1 1 30 PHE 13 A . 30 PHE k 1 6005 13 1 1 1 31 HIS 13 A . 31 HIS l 1 6005 13 1 1 1 32 GLU 13 A . 32 GLU p 1 6005 13 1 1 1 33 LEU 13 A . 33 LEU c 1 6005 13 1 1 1 34 ARG 13 A . 34 ARG c 1 6005 13 1 1 1 35 SER 13 A . 35 SER d 1 6005 13 1 1 1 36 LEU 13 A . 36 LEU d 1 6005 13 1 1 1 37 THR 13 A . 37 THR d 1 6005 13 1 1 1 38 ARG 13 A . 38 ARG d 1 6005 13 1 1 1 39 HIS 13 A . 39 HIS f 1 6005 13 1 1 1 40 PRO 13 A . 40 PRO k 1 6005 13 1 1 1 41 LYS 13 A . 41 LYS g 1 6005 13 1 1 1 42 TYR 13 A . 42 TYR o 1 6005 13 1 1 1 43 LYS 13 A . 43 LYS k 1 6005 13 1 1 1 44 THR 13 A . 44 THR b 1 6005 13 1 1 1 45 GLU 13 A . 45 GLU c 1 6005 13 1 1 1 46 LEU 13 A . 46 LEU c 1 6005 13 1 1 1 47 CYS 13 A . 47 CYS f 1 6005 13 1 1 1 48 ARG 13 A . 48 ARG k 1 6005 13 1 1 1 49 THR 13 A . 49 THR l 1 6005 13 1 1 1 50 PHE 13 A . 50 PHE m 1 6005 13 1 1 1 51 HIS 13 A . 51 HIS m 1 6005 13 1 1 1 52 THR 13 A . 52 THR n 1 6005 13 1 1 1 53 ILE 13 A . 53 ILE o 1 6005 13 1 1 1 54 GLY 13 A . 54 GLY p 1 6005 13 1 1 1 55 PHE 13 A . 55 PHE a 1 6005 13 1 1 1 56 CYS 13 A . 56 CYS f 1 6005 13 1 1 1 57 PRO 13 A . 57 PRO k 1 6005 13 1 1 1 58 TYR 13 A . 58 TYR l 1 6005 13 1 1 1 59 GLY 13 A . 59 GLY m 1 6005 13 1 1 1 60 PRO 13 A . 60 PRO m 1 6005 13 1 1 1 61 ARG 13 A . 61 ARG b 1 6005 13 1 1 1 62 CYS 13 A . 62 CYS c 1 6005 13 1 1 1 63 HIS 13 A . 63 HIS b 1 6005 13 1 1 1 64 PHE 13 A . 64 PHE d 1 6005 13 1 1 1 65 ILE 13 A . 65 ILE f 1 6005 13 1 1 1 66 HIS 13 A . 66 HIS b 1 6005 13 1 1 1 67 ASN 13 A . 67 ASN f 1 6005 13 1 1 1 68 ALA 13 A . 68 ALA b 1 6005 13 1 1 1 69 ASP 13 A . 69 ASP . 1 6005 13 1 1 1 70 GLU 13 A . 70 GLU . 1 6005 13 stop_ save_ save_PB_annotation_14 _PB_list.Sf_category PB_list _PB_list.ID 14 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 14 A . 1 SER . 1 6005 14 1 1 1 2 THR 14 A . 2 THR . 1 6005 14 1 1 1 3 ARG 14 A . 3 ARG g 1 6005 14 1 1 1 4 TYR 14 A . 4 TYR o 1 6005 14 1 1 1 5 LYS 14 A . 5 LYS k 1 6005 14 1 1 1 6 THR 14 A . 6 THR b 1 6005 14 1 1 1 7 GLU 14 A . 7 GLU c 1 6005 14 1 1 1 8 LEU 14 A . 8 LEU c 1 6005 14 1 1 1 9 CYS 14 A . 9 CYS f 1 6005 14 1 1 1 10 ARG 14 A . 10 ARG k 1 6005 14 1 1 1 11 PRO 14 A . 11 PRO l 1 6005 14 1 1 1 12 PHE 14 A . 12 PHE m 1 6005 14 1 1 1 13 GLU 14 A . 13 GLU m 1 6005 14 1 1 1 14 GLU 14 A . 14 GLU n 1 6005 14 1 1 1 15 SER 14 A . 15 SER o 1 6005 14 1 1 1 16 GLY 14 A . 16 GLY p 1 6005 14 1 1 1 17 THR 14 A . 17 THR a 1 6005 14 1 1 1 18 CYS 14 A . 18 CYS f 1 6005 14 1 1 1 19 LYS 14 A . 19 LYS k 1 6005 14 1 1 1 20 TYR 14 A . 20 TYR l 1 6005 14 1 1 1 21 GLY 14 A . 21 GLY m 1 6005 14 1 1 1 22 GLU 14 A . 22 GLU m 1 6005 14 1 1 1 23 LYS 14 A . 23 LYS l 1 6005 14 1 1 1 24 CYS 14 A . 24 CYS c 1 6005 14 1 1 1 25 GLN 14 A . 25 GLN b 1 6005 14 1 1 1 26 PHE 14 A . 26 PHE d 1 6005 14 1 1 1 27 ALA 14 A . 27 ALA f 1 6005 14 1 1 1 28 HIS 14 A . 28 HIS b 1 6005 14 1 1 1 29 GLY 14 A . 29 GLY f 1 6005 14 1 1 1 30 PHE 14 A . 30 PHE k 1 6005 14 1 1 1 31 HIS 14 A . 31 HIS l 1 6005 14 1 1 1 32 GLU 14 A . 32 GLU p 1 6005 14 1 1 1 33 LEU 14 A . 33 LEU c 1 6005 14 1 1 1 34 ARG 14 A . 34 ARG c 1 6005 14 1 1 1 35 SER 14 A . 35 SER d 1 6005 14 1 1 1 36 LEU 14 A . 36 LEU d 1 6005 14 1 1 1 37 THR 14 A . 37 THR d 1 6005 14 1 1 1 38 ARG 14 A . 38 ARG d 1 6005 14 1 1 1 39 HIS 14 A . 39 HIS f 1 6005 14 1 1 1 40 PRO 14 A . 40 PRO k 1 6005 14 1 1 1 41 LYS 14 A . 41 LYS g 1 6005 14 1 1 1 42 TYR 14 A . 42 TYR o 1 6005 14 1 1 1 43 LYS 14 A . 43 LYS k 1 6005 14 1 1 1 44 THR 14 A . 44 THR b 1 6005 14 1 1 1 45 GLU 14 A . 45 GLU c 1 6005 14 1 1 1 46 LEU 14 A . 46 LEU c 1 6005 14 1 1 1 47 CYS 14 A . 47 CYS f 1 6005 14 1 1 1 48 ARG 14 A . 48 ARG k 1 6005 14 1 1 1 49 THR 14 A . 49 THR l 1 6005 14 1 1 1 50 PHE 14 A . 50 PHE m 1 6005 14 1 1 1 51 HIS 14 A . 51 HIS m 1 6005 14 1 1 1 52 THR 14 A . 52 THR n 1 6005 14 1 1 1 53 ILE 14 A . 53 ILE o 1 6005 14 1 1 1 54 GLY 14 A . 54 GLY p 1 6005 14 1 1 1 55 PHE 14 A . 55 PHE a 1 6005 14 1 1 1 56 CYS 14 A . 56 CYS f 1 6005 14 1 1 1 57 PRO 14 A . 57 PRO k 1 6005 14 1 1 1 58 TYR 14 A . 58 TYR l 1 6005 14 1 1 1 59 GLY 14 A . 59 GLY m 1 6005 14 1 1 1 60 PRO 14 A . 60 PRO m 1 6005 14 1 1 1 61 ARG 14 A . 61 ARG b 1 6005 14 1 1 1 62 CYS 14 A . 62 CYS c 1 6005 14 1 1 1 63 HIS 14 A . 63 HIS b 1 6005 14 1 1 1 64 PHE 14 A . 64 PHE d 1 6005 14 1 1 1 65 ILE 14 A . 65 ILE f 1 6005 14 1 1 1 66 HIS 14 A . 66 HIS b 1 6005 14 1 1 1 67 ASN 14 A . 67 ASN f 1 6005 14 1 1 1 68 ALA 14 A . 68 ALA b 1 6005 14 1 1 1 69 ASP 14 A . 69 ASP . 1 6005 14 1 1 1 70 GLU 14 A . 70 GLU . 1 6005 14 stop_ save_ save_PB_annotation_15 _PB_list.Sf_category PB_list _PB_list.ID 15 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 15 A . 1 SER . 1 6005 15 1 1 1 2 THR 15 A . 2 THR . 1 6005 15 1 1 1 3 ARG 15 A . 3 ARG g 1 6005 15 1 1 1 4 TYR 15 A . 4 TYR o 1 6005 15 1 1 1 5 LYS 15 A . 5 LYS k 1 6005 15 1 1 1 6 THR 15 A . 6 THR b 1 6005 15 1 1 1 7 GLU 15 A . 7 GLU c 1 6005 15 1 1 1 8 LEU 15 A . 8 LEU c 1 6005 15 1 1 1 9 CYS 15 A . 9 CYS f 1 6005 15 1 1 1 10 ARG 15 A . 10 ARG k 1 6005 15 1 1 1 11 PRO 15 A . 11 PRO l 1 6005 15 1 1 1 12 PHE 15 A . 12 PHE m 1 6005 15 1 1 1 13 GLU 15 A . 13 GLU m 1 6005 15 1 1 1 14 GLU 15 A . 14 GLU n 1 6005 15 1 1 1 15 SER 15 A . 15 SER o 1 6005 15 1 1 1 16 GLY 15 A . 16 GLY p 1 6005 15 1 1 1 17 THR 15 A . 17 THR a 1 6005 15 1 1 1 18 CYS 15 A . 18 CYS f 1 6005 15 1 1 1 19 LYS 15 A . 19 LYS k 1 6005 15 1 1 1 20 TYR 15 A . 20 TYR l 1 6005 15 1 1 1 21 GLY 15 A . 21 GLY m 1 6005 15 1 1 1 22 GLU 15 A . 22 GLU m 1 6005 15 1 1 1 23 LYS 15 A . 23 LYS l 1 6005 15 1 1 1 24 CYS 15 A . 24 CYS c 1 6005 15 1 1 1 25 GLN 15 A . 25 GLN b 1 6005 15 1 1 1 26 PHE 15 A . 26 PHE d 1 6005 15 1 1 1 27 ALA 15 A . 27 ALA f 1 6005 15 1 1 1 28 HIS 15 A . 28 HIS b 1 6005 15 1 1 1 29 GLY 15 A . 29 GLY f 1 6005 15 1 1 1 30 PHE 15 A . 30 PHE k 1 6005 15 1 1 1 31 HIS 15 A . 31 HIS l 1 6005 15 1 1 1 32 GLU 15 A . 32 GLU p 1 6005 15 1 1 1 33 LEU 15 A . 33 LEU c 1 6005 15 1 1 1 34 ARG 15 A . 34 ARG c 1 6005 15 1 1 1 35 SER 15 A . 35 SER d 1 6005 15 1 1 1 36 LEU 15 A . 36 LEU d 1 6005 15 1 1 1 37 THR 15 A . 37 THR d 1 6005 15 1 1 1 38 ARG 15 A . 38 ARG d 1 6005 15 1 1 1 39 HIS 15 A . 39 HIS f 1 6005 15 1 1 1 40 PRO 15 A . 40 PRO k 1 6005 15 1 1 1 41 LYS 15 A . 41 LYS g 1 6005 15 1 1 1 42 TYR 15 A . 42 TYR o 1 6005 15 1 1 1 43 LYS 15 A . 43 LYS k 1 6005 15 1 1 1 44 THR 15 A . 44 THR b 1 6005 15 1 1 1 45 GLU 15 A . 45 GLU c 1 6005 15 1 1 1 46 LEU 15 A . 46 LEU c 1 6005 15 1 1 1 47 CYS 15 A . 47 CYS f 1 6005 15 1 1 1 48 ARG 15 A . 48 ARG k 1 6005 15 1 1 1 49 THR 15 A . 49 THR l 1 6005 15 1 1 1 50 PHE 15 A . 50 PHE m 1 6005 15 1 1 1 51 HIS 15 A . 51 HIS m 1 6005 15 1 1 1 52 THR 15 A . 52 THR n 1 6005 15 1 1 1 53 ILE 15 A . 53 ILE o 1 6005 15 1 1 1 54 GLY 15 A . 54 GLY p 1 6005 15 1 1 1 55 PHE 15 A . 55 PHE a 1 6005 15 1 1 1 56 CYS 15 A . 56 CYS f 1 6005 15 1 1 1 57 PRO 15 A . 57 PRO k 1 6005 15 1 1 1 58 TYR 15 A . 58 TYR l 1 6005 15 1 1 1 59 GLY 15 A . 59 GLY m 1 6005 15 1 1 1 60 PRO 15 A . 60 PRO m 1 6005 15 1 1 1 61 ARG 15 A . 61 ARG b 1 6005 15 1 1 1 62 CYS 15 A . 62 CYS c 1 6005 15 1 1 1 63 HIS 15 A . 63 HIS b 1 6005 15 1 1 1 64 PHE 15 A . 64 PHE d 1 6005 15 1 1 1 65 ILE 15 A . 65 ILE f 1 6005 15 1 1 1 66 HIS 15 A . 66 HIS b 1 6005 15 1 1 1 67 ASN 15 A . 67 ASN d 1 6005 15 1 1 1 68 ALA 15 A . 68 ALA c 1 6005 15 1 1 1 69 ASP 15 A . 69 ASP . 1 6005 15 1 1 1 70 GLU 15 A . 70 GLU . 1 6005 15 stop_ save_ save_PB_annotation_16 _PB_list.Sf_category PB_list _PB_list.ID 16 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzehkbccfklmmnopafklmmlcbdfbfkloccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 16 A . 1 SER . 1 6005 16 1 1 1 2 THR 16 A . 2 THR . 1 6005 16 1 1 1 3 ARG 16 A . 3 ARG e 1 6005 16 1 1 1 4 TYR 16 A . 4 TYR h 1 6005 16 1 1 1 5 LYS 16 A . 5 LYS k 1 6005 16 1 1 1 6 THR 16 A . 6 THR b 1 6005 16 1 1 1 7 GLU 16 A . 7 GLU c 1 6005 16 1 1 1 8 LEU 16 A . 8 LEU c 1 6005 16 1 1 1 9 CYS 16 A . 9 CYS f 1 6005 16 1 1 1 10 ARG 16 A . 10 ARG k 1 6005 16 1 1 1 11 PRO 16 A . 11 PRO l 1 6005 16 1 1 1 12 PHE 16 A . 12 PHE m 1 6005 16 1 1 1 13 GLU 16 A . 13 GLU m 1 6005 16 1 1 1 14 GLU 16 A . 14 GLU n 1 6005 16 1 1 1 15 SER 16 A . 15 SER o 1 6005 16 1 1 1 16 GLY 16 A . 16 GLY p 1 6005 16 1 1 1 17 THR 16 A . 17 THR a 1 6005 16 1 1 1 18 CYS 16 A . 18 CYS f 1 6005 16 1 1 1 19 LYS 16 A . 19 LYS k 1 6005 16 1 1 1 20 TYR 16 A . 20 TYR l 1 6005 16 1 1 1 21 GLY 16 A . 21 GLY m 1 6005 16 1 1 1 22 GLU 16 A . 22 GLU m 1 6005 16 1 1 1 23 LYS 16 A . 23 LYS l 1 6005 16 1 1 1 24 CYS 16 A . 24 CYS c 1 6005 16 1 1 1 25 GLN 16 A . 25 GLN b 1 6005 16 1 1 1 26 PHE 16 A . 26 PHE d 1 6005 16 1 1 1 27 ALA 16 A . 27 ALA f 1 6005 16 1 1 1 28 HIS 16 A . 28 HIS b 1 6005 16 1 1 1 29 GLY 16 A . 29 GLY f 1 6005 16 1 1 1 30 PHE 16 A . 30 PHE k 1 6005 16 1 1 1 31 HIS 16 A . 31 HIS l 1 6005 16 1 1 1 32 GLU 16 A . 32 GLU o 1 6005 16 1 1 1 33 LEU 16 A . 33 LEU c 1 6005 16 1 1 1 34 ARG 16 A . 34 ARG c 1 6005 16 1 1 1 35 SER 16 A . 35 SER d 1 6005 16 1 1 1 36 LEU 16 A . 36 LEU d 1 6005 16 1 1 1 37 THR 16 A . 37 THR d 1 6005 16 1 1 1 38 ARG 16 A . 38 ARG d 1 6005 16 1 1 1 39 HIS 16 A . 39 HIS f 1 6005 16 1 1 1 40 PRO 16 A . 40 PRO k 1 6005 16 1 1 1 41 LYS 16 A . 41 LYS g 1 6005 16 1 1 1 42 TYR 16 A . 42 TYR o 1 6005 16 1 1 1 43 LYS 16 A . 43 LYS k 1 6005 16 1 1 1 44 THR 16 A . 44 THR b 1 6005 16 1 1 1 45 GLU 16 A . 45 GLU c 1 6005 16 1 1 1 46 LEU 16 A . 46 LEU c 1 6005 16 1 1 1 47 CYS 16 A . 47 CYS f 1 6005 16 1 1 1 48 ARG 16 A . 48 ARG k 1 6005 16 1 1 1 49 THR 16 A . 49 THR l 1 6005 16 1 1 1 50 PHE 16 A . 50 PHE m 1 6005 16 1 1 1 51 HIS 16 A . 51 HIS m 1 6005 16 1 1 1 52 THR 16 A . 52 THR n 1 6005 16 1 1 1 53 ILE 16 A . 53 ILE o 1 6005 16 1 1 1 54 GLY 16 A . 54 GLY p 1 6005 16 1 1 1 55 PHE 16 A . 55 PHE a 1 6005 16 1 1 1 56 CYS 16 A . 56 CYS f 1 6005 16 1 1 1 57 PRO 16 A . 57 PRO k 1 6005 16 1 1 1 58 TYR 16 A . 58 TYR l 1 6005 16 1 1 1 59 GLY 16 A . 59 GLY m 1 6005 16 1 1 1 60 PRO 16 A . 60 PRO m 1 6005 16 1 1 1 61 ARG 16 A . 61 ARG b 1 6005 16 1 1 1 62 CYS 16 A . 62 CYS c 1 6005 16 1 1 1 63 HIS 16 A . 63 HIS b 1 6005 16 1 1 1 64 PHE 16 A . 64 PHE d 1 6005 16 1 1 1 65 ILE 16 A . 65 ILE f 1 6005 16 1 1 1 66 HIS 16 A . 66 HIS b 1 6005 16 1 1 1 67 ASN 16 A . 67 ASN f 1 6005 16 1 1 1 68 ALA 16 A . 68 ALA b 1 6005 16 1 1 1 69 ASP 16 A . 69 ASP . 1 6005 16 1 1 1 70 GLU 16 A . 70 GLU . 1 6005 16 stop_ save_ save_PB_annotation_17 _PB_list.Sf_category PB_list _PB_list.ID 17 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokaccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 17 A . 1 SER . 1 6005 17 1 1 1 2 THR 17 A . 2 THR . 1 6005 17 1 1 1 3 ARG 17 A . 3 ARG g 1 6005 17 1 1 1 4 TYR 17 A . 4 TYR o 1 6005 17 1 1 1 5 LYS 17 A . 5 LYS k 1 6005 17 1 1 1 6 THR 17 A . 6 THR a 1 6005 17 1 1 1 7 GLU 17 A . 7 GLU c 1 6005 17 1 1 1 8 LEU 17 A . 8 LEU c 1 6005 17 1 1 1 9 CYS 17 A . 9 CYS f 1 6005 17 1 1 1 10 ARG 17 A . 10 ARG k 1 6005 17 1 1 1 11 PRO 17 A . 11 PRO l 1 6005 17 1 1 1 12 PHE 17 A . 12 PHE m 1 6005 17 1 1 1 13 GLU 17 A . 13 GLU m 1 6005 17 1 1 1 14 GLU 17 A . 14 GLU n 1 6005 17 1 1 1 15 SER 17 A . 15 SER o 1 6005 17 1 1 1 16 GLY 17 A . 16 GLY p 1 6005 17 1 1 1 17 THR 17 A . 17 THR a 1 6005 17 1 1 1 18 CYS 17 A . 18 CYS f 1 6005 17 1 1 1 19 LYS 17 A . 19 LYS k 1 6005 17 1 1 1 20 TYR 17 A . 20 TYR l 1 6005 17 1 1 1 21 GLY 17 A . 21 GLY m 1 6005 17 1 1 1 22 GLU 17 A . 22 GLU m 1 6005 17 1 1 1 23 LYS 17 A . 23 LYS l 1 6005 17 1 1 1 24 CYS 17 A . 24 CYS c 1 6005 17 1 1 1 25 GLN 17 A . 25 GLN b 1 6005 17 1 1 1 26 PHE 17 A . 26 PHE d 1 6005 17 1 1 1 27 ALA 17 A . 27 ALA f 1 6005 17 1 1 1 28 HIS 17 A . 28 HIS b 1 6005 17 1 1 1 29 GLY 17 A . 29 GLY f 1 6005 17 1 1 1 30 PHE 17 A . 30 PHE k 1 6005 17 1 1 1 31 HIS 17 A . 31 HIS l 1 6005 17 1 1 1 32 GLU 17 A . 32 GLU p 1 6005 17 1 1 1 33 LEU 17 A . 33 LEU c 1 6005 17 1 1 1 34 ARG 17 A . 34 ARG c 1 6005 17 1 1 1 35 SER 17 A . 35 SER d 1 6005 17 1 1 1 36 LEU 17 A . 36 LEU d 1 6005 17 1 1 1 37 THR 17 A . 37 THR d 1 6005 17 1 1 1 38 ARG 17 A . 38 ARG d 1 6005 17 1 1 1 39 HIS 17 A . 39 HIS f 1 6005 17 1 1 1 40 PRO 17 A . 40 PRO k 1 6005 17 1 1 1 41 LYS 17 A . 41 LYS g 1 6005 17 1 1 1 42 TYR 17 A . 42 TYR o 1 6005 17 1 1 1 43 LYS 17 A . 43 LYS k 1 6005 17 1 1 1 44 THR 17 A . 44 THR b 1 6005 17 1 1 1 45 GLU 17 A . 45 GLU c 1 6005 17 1 1 1 46 LEU 17 A . 46 LEU c 1 6005 17 1 1 1 47 CYS 17 A . 47 CYS f 1 6005 17 1 1 1 48 ARG 17 A . 48 ARG k 1 6005 17 1 1 1 49 THR 17 A . 49 THR l 1 6005 17 1 1 1 50 PHE 17 A . 50 PHE m 1 6005 17 1 1 1 51 HIS 17 A . 51 HIS m 1 6005 17 1 1 1 52 THR 17 A . 52 THR n 1 6005 17 1 1 1 53 ILE 17 A . 53 ILE o 1 6005 17 1 1 1 54 GLY 17 A . 54 GLY p 1 6005 17 1 1 1 55 PHE 17 A . 55 PHE a 1 6005 17 1 1 1 56 CYS 17 A . 56 CYS f 1 6005 17 1 1 1 57 PRO 17 A . 57 PRO k 1 6005 17 1 1 1 58 TYR 17 A . 58 TYR l 1 6005 17 1 1 1 59 GLY 17 A . 59 GLY m 1 6005 17 1 1 1 60 PRO 17 A . 60 PRO m 1 6005 17 1 1 1 61 ARG 17 A . 61 ARG b 1 6005 17 1 1 1 62 CYS 17 A . 62 CYS c 1 6005 17 1 1 1 63 HIS 17 A . 63 HIS b 1 6005 17 1 1 1 64 PHE 17 A . 64 PHE d 1 6005 17 1 1 1 65 ILE 17 A . 65 ILE f 1 6005 17 1 1 1 66 HIS 17 A . 66 HIS b 1 6005 17 1 1 1 67 ASN 17 A . 67 ASN f 1 6005 17 1 1 1 68 ALA 17 A . 68 ALA b 1 6005 17 1 1 1 69 ASP 17 A . 69 ASP . 1 6005 17 1 1 1 70 GLU 17 A . 70 GLU . 1 6005 17 stop_ save_ save_PB_annotation_18 _PB_list.Sf_category PB_list _PB_list.ID 18 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zznokbccfklmmnopafklmmlcbdfbfkloccddddfkgokbccfklmmnopafklmmbcbdfbfczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 18 A . 1 SER . 1 6005 18 1 1 1 2 THR 18 A . 2 THR . 1 6005 18 1 1 1 3 ARG 18 A . 3 ARG n 1 6005 18 1 1 1 4 TYR 18 A . 4 TYR o 1 6005 18 1 1 1 5 LYS 18 A . 5 LYS k 1 6005 18 1 1 1 6 THR 18 A . 6 THR b 1 6005 18 1 1 1 7 GLU 18 A . 7 GLU c 1 6005 18 1 1 1 8 LEU 18 A . 8 LEU c 1 6005 18 1 1 1 9 CYS 18 A . 9 CYS f 1 6005 18 1 1 1 10 ARG 18 A . 10 ARG k 1 6005 18 1 1 1 11 PRO 18 A . 11 PRO l 1 6005 18 1 1 1 12 PHE 18 A . 12 PHE m 1 6005 18 1 1 1 13 GLU 18 A . 13 GLU m 1 6005 18 1 1 1 14 GLU 18 A . 14 GLU n 1 6005 18 1 1 1 15 SER 18 A . 15 SER o 1 6005 18 1 1 1 16 GLY 18 A . 16 GLY p 1 6005 18 1 1 1 17 THR 18 A . 17 THR a 1 6005 18 1 1 1 18 CYS 18 A . 18 CYS f 1 6005 18 1 1 1 19 LYS 18 A . 19 LYS k 1 6005 18 1 1 1 20 TYR 18 A . 20 TYR l 1 6005 18 1 1 1 21 GLY 18 A . 21 GLY m 1 6005 18 1 1 1 22 GLU 18 A . 22 GLU m 1 6005 18 1 1 1 23 LYS 18 A . 23 LYS l 1 6005 18 1 1 1 24 CYS 18 A . 24 CYS c 1 6005 18 1 1 1 25 GLN 18 A . 25 GLN b 1 6005 18 1 1 1 26 PHE 18 A . 26 PHE d 1 6005 18 1 1 1 27 ALA 18 A . 27 ALA f 1 6005 18 1 1 1 28 HIS 18 A . 28 HIS b 1 6005 18 1 1 1 29 GLY 18 A . 29 GLY f 1 6005 18 1 1 1 30 PHE 18 A . 30 PHE k 1 6005 18 1 1 1 31 HIS 18 A . 31 HIS l 1 6005 18 1 1 1 32 GLU 18 A . 32 GLU o 1 6005 18 1 1 1 33 LEU 18 A . 33 LEU c 1 6005 18 1 1 1 34 ARG 18 A . 34 ARG c 1 6005 18 1 1 1 35 SER 18 A . 35 SER d 1 6005 18 1 1 1 36 LEU 18 A . 36 LEU d 1 6005 18 1 1 1 37 THR 18 A . 37 THR d 1 6005 18 1 1 1 38 ARG 18 A . 38 ARG d 1 6005 18 1 1 1 39 HIS 18 A . 39 HIS f 1 6005 18 1 1 1 40 PRO 18 A . 40 PRO k 1 6005 18 1 1 1 41 LYS 18 A . 41 LYS g 1 6005 18 1 1 1 42 TYR 18 A . 42 TYR o 1 6005 18 1 1 1 43 LYS 18 A . 43 LYS k 1 6005 18 1 1 1 44 THR 18 A . 44 THR b 1 6005 18 1 1 1 45 GLU 18 A . 45 GLU c 1 6005 18 1 1 1 46 LEU 18 A . 46 LEU c 1 6005 18 1 1 1 47 CYS 18 A . 47 CYS f 1 6005 18 1 1 1 48 ARG 18 A . 48 ARG k 1 6005 18 1 1 1 49 THR 18 A . 49 THR l 1 6005 18 1 1 1 50 PHE 18 A . 50 PHE m 1 6005 18 1 1 1 51 HIS 18 A . 51 HIS m 1 6005 18 1 1 1 52 THR 18 A . 52 THR n 1 6005 18 1 1 1 53 ILE 18 A . 53 ILE o 1 6005 18 1 1 1 54 GLY 18 A . 54 GLY p 1 6005 18 1 1 1 55 PHE 18 A . 55 PHE a 1 6005 18 1 1 1 56 CYS 18 A . 56 CYS f 1 6005 18 1 1 1 57 PRO 18 A . 57 PRO k 1 6005 18 1 1 1 58 TYR 18 A . 58 TYR l 1 6005 18 1 1 1 59 GLY 18 A . 59 GLY m 1 6005 18 1 1 1 60 PRO 18 A . 60 PRO m 1 6005 18 1 1 1 61 ARG 18 A . 61 ARG b 1 6005 18 1 1 1 62 CYS 18 A . 62 CYS c 1 6005 18 1 1 1 63 HIS 18 A . 63 HIS b 1 6005 18 1 1 1 64 PHE 18 A . 64 PHE d 1 6005 18 1 1 1 65 ILE 18 A . 65 ILE f 1 6005 18 1 1 1 66 HIS 18 A . 66 HIS b 1 6005 18 1 1 1 67 ASN 18 A . 67 ASN f 1 6005 18 1 1 1 68 ALA 18 A . 68 ALA c 1 6005 18 1 1 1 69 ASP 18 A . 69 ASP . 1 6005 18 1 1 1 70 GLU 18 A . 70 GLU . 1 6005 18 stop_ save_ save_PB_annotation_19 _PB_list.Sf_category PB_list _PB_list.ID 19 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzehkbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbfbzz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 19 A . 1 SER . 1 6005 19 1 1 1 2 THR 19 A . 2 THR . 1 6005 19 1 1 1 3 ARG 19 A . 3 ARG e 1 6005 19 1 1 1 4 TYR 19 A . 4 TYR h 1 6005 19 1 1 1 5 LYS 19 A . 5 LYS k 1 6005 19 1 1 1 6 THR 19 A . 6 THR b 1 6005 19 1 1 1 7 GLU 19 A . 7 GLU c 1 6005 19 1 1 1 8 LEU 19 A . 8 LEU c 1 6005 19 1 1 1 9 CYS 19 A . 9 CYS f 1 6005 19 1 1 1 10 ARG 19 A . 10 ARG k 1 6005 19 1 1 1 11 PRO 19 A . 11 PRO l 1 6005 19 1 1 1 12 PHE 19 A . 12 PHE m 1 6005 19 1 1 1 13 GLU 19 A . 13 GLU m 1 6005 19 1 1 1 14 GLU 19 A . 14 GLU n 1 6005 19 1 1 1 15 SER 19 A . 15 SER o 1 6005 19 1 1 1 16 GLY 19 A . 16 GLY p 1 6005 19 1 1 1 17 THR 19 A . 17 THR a 1 6005 19 1 1 1 18 CYS 19 A . 18 CYS f 1 6005 19 1 1 1 19 LYS 19 A . 19 LYS k 1 6005 19 1 1 1 20 TYR 19 A . 20 TYR l 1 6005 19 1 1 1 21 GLY 19 A . 21 GLY m 1 6005 19 1 1 1 22 GLU 19 A . 22 GLU m 1 6005 19 1 1 1 23 LYS 19 A . 23 LYS l 1 6005 19 1 1 1 24 CYS 19 A . 24 CYS c 1 6005 19 1 1 1 25 GLN 19 A . 25 GLN b 1 6005 19 1 1 1 26 PHE 19 A . 26 PHE d 1 6005 19 1 1 1 27 ALA 19 A . 27 ALA f 1 6005 19 1 1 1 28 HIS 19 A . 28 HIS b 1 6005 19 1 1 1 29 GLY 19 A . 29 GLY f 1 6005 19 1 1 1 30 PHE 19 A . 30 PHE k 1 6005 19 1 1 1 31 HIS 19 A . 31 HIS l 1 6005 19 1 1 1 32 GLU 19 A . 32 GLU p 1 6005 19 1 1 1 33 LEU 19 A . 33 LEU c 1 6005 19 1 1 1 34 ARG 19 A . 34 ARG c 1 6005 19 1 1 1 35 SER 19 A . 35 SER d 1 6005 19 1 1 1 36 LEU 19 A . 36 LEU d 1 6005 19 1 1 1 37 THR 19 A . 37 THR d 1 6005 19 1 1 1 38 ARG 19 A . 38 ARG d 1 6005 19 1 1 1 39 HIS 19 A . 39 HIS f 1 6005 19 1 1 1 40 PRO 19 A . 40 PRO k 1 6005 19 1 1 1 41 LYS 19 A . 41 LYS g 1 6005 19 1 1 1 42 TYR 19 A . 42 TYR o 1 6005 19 1 1 1 43 LYS 19 A . 43 LYS k 1 6005 19 1 1 1 44 THR 19 A . 44 THR b 1 6005 19 1 1 1 45 GLU 19 A . 45 GLU c 1 6005 19 1 1 1 46 LEU 19 A . 46 LEU c 1 6005 19 1 1 1 47 CYS 19 A . 47 CYS f 1 6005 19 1 1 1 48 ARG 19 A . 48 ARG k 1 6005 19 1 1 1 49 THR 19 A . 49 THR l 1 6005 19 1 1 1 50 PHE 19 A . 50 PHE m 1 6005 19 1 1 1 51 HIS 19 A . 51 HIS m 1 6005 19 1 1 1 52 THR 19 A . 52 THR n 1 6005 19 1 1 1 53 ILE 19 A . 53 ILE o 1 6005 19 1 1 1 54 GLY 19 A . 54 GLY p 1 6005 19 1 1 1 55 PHE 19 A . 55 PHE a 1 6005 19 1 1 1 56 CYS 19 A . 56 CYS f 1 6005 19 1 1 1 57 PRO 19 A . 57 PRO k 1 6005 19 1 1 1 58 TYR 19 A . 58 TYR l 1 6005 19 1 1 1 59 GLY 19 A . 59 GLY m 1 6005 19 1 1 1 60 PRO 19 A . 60 PRO m 1 6005 19 1 1 1 61 ARG 19 A . 61 ARG b 1 6005 19 1 1 1 62 CYS 19 A . 62 CYS c 1 6005 19 1 1 1 63 HIS 19 A . 63 HIS b 1 6005 19 1 1 1 64 PHE 19 A . 64 PHE d 1 6005 19 1 1 1 65 ILE 19 A . 65 ILE f 1 6005 19 1 1 1 66 HIS 19 A . 66 HIS b 1 6005 19 1 1 1 67 ASN 19 A . 67 ASN f 1 6005 19 1 1 1 68 ALA 19 A . 68 ALA b 1 6005 19 1 1 1 69 ASP 19 A . 69 ASP . 1 6005 19 1 1 1 70 GLU 19 A . 70 GLU . 1 6005 19 stop_ save_ save_PB_annotation_20 _PB_list.Sf_category PB_list _PB_list.ID 20 _PB_list.Query_ID db1rgo_1162#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1rgo.ent _PB_list.Output_file_name bmr6005_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr6005_PB.str _PB_list.AA_seq_one_letter_code STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE _PB_list.PB_seq_code zzgokbccfklmmnopafklmmlcbdfbfklpccddddfkgokbccfklmmnopafklmmbcbdfbdczz _PB_list.PDB_ID 1RGO _PB_list.PDBX_exptl_method "SOLUTION NMR" _PB_list.PDBX_NMR_refine_method "Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed." _PB_list.Entry_ID 6005 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 SER 20 A . 1 SER . 1 6005 20 1 1 1 2 THR 20 A . 2 THR . 1 6005 20 1 1 1 3 ARG 20 A . 3 ARG g 1 6005 20 1 1 1 4 TYR 20 A . 4 TYR o 1 6005 20 1 1 1 5 LYS 20 A . 5 LYS k 1 6005 20 1 1 1 6 THR 20 A . 6 THR b 1 6005 20 1 1 1 7 GLU 20 A . 7 GLU c 1 6005 20 1 1 1 8 LEU 20 A . 8 LEU c 1 6005 20 1 1 1 9 CYS 20 A . 9 CYS f 1 6005 20 1 1 1 10 ARG 20 A . 10 ARG k 1 6005 20 1 1 1 11 PRO 20 A . 11 PRO l 1 6005 20 1 1 1 12 PHE 20 A . 12 PHE m 1 6005 20 1 1 1 13 GLU 20 A . 13 GLU m 1 6005 20 1 1 1 14 GLU 20 A . 14 GLU n 1 6005 20 1 1 1 15 SER 20 A . 15 SER o 1 6005 20 1 1 1 16 GLY 20 A . 16 GLY p 1 6005 20 1 1 1 17 THR 20 A . 17 THR a 1 6005 20 1 1 1 18 CYS 20 A . 18 CYS f 1 6005 20 1 1 1 19 LYS 20 A . 19 LYS k 1 6005 20 1 1 1 20 TYR 20 A . 20 TYR l 1 6005 20 1 1 1 21 GLY 20 A . 21 GLY m 1 6005 20 1 1 1 22 GLU 20 A . 22 GLU m 1 6005 20 1 1 1 23 LYS 20 A . 23 LYS l 1 6005 20 1 1 1 24 CYS 20 A . 24 CYS c 1 6005 20 1 1 1 25 GLN 20 A . 25 GLN b 1 6005 20 1 1 1 26 PHE 20 A . 26 PHE d 1 6005 20 1 1 1 27 ALA 20 A . 27 ALA f 1 6005 20 1 1 1 28 HIS 20 A . 28 HIS b 1 6005 20 1 1 1 29 GLY 20 A . 29 GLY f 1 6005 20 1 1 1 30 PHE 20 A . 30 PHE k 1 6005 20 1 1 1 31 HIS 20 A . 31 HIS l 1 6005 20 1 1 1 32 GLU 20 A . 32 GLU p 1 6005 20 1 1 1 33 LEU 20 A . 33 LEU c 1 6005 20 1 1 1 34 ARG 20 A . 34 ARG c 1 6005 20 1 1 1 35 SER 20 A . 35 SER d 1 6005 20 1 1 1 36 LEU 20 A . 36 LEU d 1 6005 20 1 1 1 37 THR 20 A . 37 THR d 1 6005 20 1 1 1 38 ARG 20 A . 38 ARG d 1 6005 20 1 1 1 39 HIS 20 A . 39 HIS f 1 6005 20 1 1 1 40 PRO 20 A . 40 PRO k 1 6005 20 1 1 1 41 LYS 20 A . 41 LYS g 1 6005 20 1 1 1 42 TYR 20 A . 42 TYR o 1 6005 20 1 1 1 43 LYS 20 A . 43 LYS k 1 6005 20 1 1 1 44 THR 20 A . 44 THR b 1 6005 20 1 1 1 45 GLU 20 A . 45 GLU c 1 6005 20 1 1 1 46 LEU 20 A . 46 LEU c 1 6005 20 1 1 1 47 CYS 20 A . 47 CYS f 1 6005 20 1 1 1 48 ARG 20 A . 48 ARG k 1 6005 20 1 1 1 49 THR 20 A . 49 THR l 1 6005 20 1 1 1 50 PHE 20 A . 50 PHE m 1 6005 20 1 1 1 51 HIS 20 A . 51 HIS m 1 6005 20 1 1 1 52 THR 20 A . 52 THR n 1 6005 20 1 1 1 53 ILE 20 A . 53 ILE o 1 6005 20 1 1 1 54 GLY 20 A . 54 GLY p 1 6005 20 1 1 1 55 PHE 20 A . 55 PHE a 1 6005 20 1 1 1 56 CYS 20 A . 56 CYS f 1 6005 20 1 1 1 57 PRO 20 A . 57 PRO k 1 6005 20 1 1 1 58 TYR 20 A . 58 TYR l 1 6005 20 1 1 1 59 GLY 20 A . 59 GLY m 1 6005 20 1 1 1 60 PRO 20 A . 60 PRO m 1 6005 20 1 1 1 61 ARG 20 A . 61 ARG b 1 6005 20 1 1 1 62 CYS 20 A . 62 CYS c 1 6005 20 1 1 1 63 HIS 20 A . 63 HIS b 1 6005 20 1 1 1 64 PHE 20 A . 64 PHE d 1 6005 20 1 1 1 65 ILE 20 A . 65 ILE f 1 6005 20 1 1 1 66 HIS 20 A . 66 HIS b 1 6005 20 1 1 1 67 ASN 20 A . 67 ASN d 1 6005 20 1 1 1 68 ALA 20 A . 68 ALA c 1 6005 20 1 1 1 69 ASP 20 A . 69 ASP . 1 6005 20 1 1 1 70 GLU 20 A . 70 GLU . 1 6005 20 stop_ save_