data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1m8a_6719#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1m8a.ent _PB_list.Output_file_name bmr15596_1m8a_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr15596_1m8a_PB.str _PB_list.AA_seq_one_letter_code DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK _PB_list.PB_seq_code zzfbdcfbdcdfklpgbdcdddfklopabdcdddddfkopacdddfkbmklmmmmmmmmzz _PB_list.PDB_ID 1M8A _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.2383 _PB_list.PDBX_refine_ls_R_factor_R_work 0.1897 _PB_list.PDBX_refine_ls_d_res_high 1.70 _PB_list.PDBX_refine_ls_d_res_low 15.00 _PB_list.Entry_ID 15596 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . A . 1 ALA . 1 15596 1 1 1 1 2 SER . A . 2 SER . 1 15596 1 1 1 1 3 ASN . A . 3 ASN . 1 15596 1 1 1 1 4 PHE . A . 4 PHE . 1 15596 1 1 1 1 5 ASP . A . 5 ASP . 1 15596 1 1 1 1 6 CYS . A . 6 CYS . 1 15596 1 1 1 1 7 CYS . A . 7 CYS f 1 15596 1 1 1 1 8 LEU . A . 8 LEU b 1 15596 1 1 1 1 9 GLY . A . 9 GLY d 1 15596 1 1 1 1 10 TYR . A . 10 TYR c 1 15596 1 1 1 1 11 THR . A . 11 THR f 1 15596 1 1 1 1 12 ASP . A . 12 ASP b 1 15596 1 1 1 1 13 ARG . A . 13 ARG d 1 15596 1 1 1 1 14 ILE . A . 14 ILE c 1 15596 1 1 1 1 15 LEU . A . 15 LEU d 1 15596 1 1 1 1 16 HIS . A . 16 HIS f 1 15596 1 1 1 1 17 PRO . A . 17 PRO k 1 15596 1 1 1 1 18 LYS . A . 18 LYS l 1 15596 1 1 1 1 19 PHE . A . 19 PHE p 1 15596 1 1 1 1 20 ILE . A . 20 ILE g 1 15596 1 1 1 1 21 VAL . A . 21 VAL b 1 15596 1 1 1 1 22 GLY . A . 22 GLY d 1 15596 1 1 1 1 23 PHE . A . 23 PHE c 1 15596 1 1 1 1 24 THR . A . 24 THR d 1 15596 1 1 1 1 25 ARG . A . 25 ARG d 1 15596 1 1 1 1 26 GLN . A . 26 GLN d 1 15596 1 1 1 1 27 LEU . A . 27 LEU f 1 15596 1 1 1 1 28 ALA . A . 28 ALA k 1 15596 1 1 1 1 29 ASN . A . 29 ASN l 1 15596 1 1 1 1 30 GLU . A . 30 GLU o 1 15596 1 1 1 1 31 GLY . A . 31 GLY p 1 15596 1 1 1 1 32 CYS . A . 32 CYS a 1 15596 1 1 1 1 33 ASP . A . 33 ASP b 1 15596 1 1 1 1 34 ILE . A . 34 ILE d 1 15596 1 1 1 1 35 ASN . A . 35 ASN c 1 15596 1 1 1 1 36 ALA . A . 36 ALA d 1 15596 1 1 1 1 37 ILE . A . 37 ILE d 1 15596 1 1 1 1 38 ILE . A . 38 ILE d 1 15596 1 1 1 1 39 PHE . A . 39 PHE d 1 15596 1 1 1 1 40 HIS . A . 40 HIS d 1 15596 1 1 1 1 41 THR . A . 41 THR f 1 15596 1 1 1 1 42 LYS . A . 42 LYS k 1 15596 1 1 1 1 43 LYS . A . 43 LYS o 1 15596 1 1 1 1 44 LYS . A . 44 LYS p 1 15596 1 1 1 1 45 LEU . A . 45 LEU a 1 15596 1 1 1 1 46 SER . A . 46 SER c 1 15596 1 1 1 1 47 VAL . A . 47 VAL d 1 15596 1 1 1 1 48 CYS . A . 48 CYS d 1 15596 1 1 1 1 49 ALA . A . 49 ALA d 1 15596 1 1 1 1 50 ASN . A . 50 ASN f 1 15596 1 1 1 1 51 PRO . A . 51 PRO k 1 15596 1 1 1 1 52 LYS . A . 52 LYS b 1 15596 1 1 1 1 53 GLN . A . 53 GLN m 1 15596 1 1 1 1 54 THR . A . 54 THR k 1 15596 1 1 1 1 55 TRP . A . 55 TRP l 1 15596 1 1 1 1 56 VAL . A . 56 VAL m 1 15596 1 1 1 1 57 LYS . A . 57 LYS m 1 15596 1 1 1 1 58 TYR . A . 58 TYR m 1 15596 1 1 1 1 59 ILE . A . 59 ILE m 1 15596 1 1 1 1 60 VAL . A . 60 VAL m 1 15596 1 1 1 1 61 ARG . A . 61 ARG m 1 15596 1 1 1 1 62 LEU . A . 62 LEU m 1 15596 1 1 1 1 63 LEU . A . 63 LEU m 1 15596 1 1 1 1 64 SER . A . 64 SER . 1 15596 1 1 1 1 65 LYS . A . 65 LYS . 1 15596 1 1 1 1 66 LYS . A . 66 LYS . 1 15596 1 1 1 1 67 VAL . A . 67 VAL . 1 15596 1 1 1 1 68 LYS . A . 68 LYS . 1 15596 1 1 1 1 69 ASN . A . 69 ASN . 1 15596 1 1 1 1 70 MET . A . 70 MET . 1 15596 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1m8a_6719#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1m8a.ent _PB_list.Output_file_name bmr15596_1m8a_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr15596_1m8a_PB.str _PB_list.AA_seq_one_letter_code DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK _PB_list.PB_seq_code zzfbdcfbdcdfklpgbdcdddddfkbmbdcdddddfkopacdddfkbmklmmmmmmmmzz _PB_list.PDB_ID 1M8A _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.2383 _PB_list.PDBX_refine_ls_R_factor_R_work 0.1897 _PB_list.PDBX_refine_ls_d_res_high 1.70 _PB_list.PDBX_refine_ls_d_res_low 15.00 _PB_list.Entry_ID 15596 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . B . 1 ALA . 1 15596 2 1 1 1 2 SER . B . 2 SER . 1 15596 2 1 1 1 3 ASN . B . 3 ASN . 1 15596 2 1 1 1 4 PHE . B . 4 PHE . 1 15596 2 1 1 1 5 ASP . B . 5 ASP . 1 15596 2 1 1 1 6 CYS . B . 6 CYS . 1 15596 2 1 1 1 7 CYS . B . 7 CYS f 1 15596 2 1 1 1 8 LEU . B . 8 LEU b 1 15596 2 1 1 1 9 GLY . B . 9 GLY d 1 15596 2 1 1 1 10 TYR . B . 10 TYR c 1 15596 2 1 1 1 11 THR . B . 11 THR f 1 15596 2 1 1 1 12 ASP . B . 12 ASP b 1 15596 2 1 1 1 13 ARG . B . 13 ARG d 1 15596 2 1 1 1 14 ILE . B . 14 ILE c 1 15596 2 1 1 1 15 LEU . B . 15 LEU d 1 15596 2 1 1 1 16 HIS . B . 16 HIS f 1 15596 2 1 1 1 17 PRO . B . 17 PRO k 1 15596 2 1 1 1 18 LYS . B . 18 LYS l 1 15596 2 1 1 1 19 PHE . B . 19 PHE p 1 15596 2 1 1 1 20 ILE . B . 20 ILE g 1 15596 2 1 1 1 21 VAL . B . 21 VAL b 1 15596 2 1 1 1 22 GLY . B . 22 GLY d 1 15596 2 1 1 1 23 PHE . B . 23 PHE c 1 15596 2 1 1 1 24 THR . B . 24 THR d 1 15596 2 1 1 1 25 ARG . B . 25 ARG d 1 15596 2 1 1 1 26 GLN . B . 26 GLN d 1 15596 2 1 1 1 27 LEU . B . 27 LEU d 1 15596 2 1 1 1 28 ALA . B . 28 ALA d 1 15596 2 1 1 1 29 ASN . B . 29 ASN f 1 15596 2 1 1 1 30 GLU . B . 30 GLU k 1 15596 2 1 1 1 31 GLY . B . 31 GLY b 1 15596 2 1 1 1 32 CYS . B . 32 CYS m 1 15596 2 1 1 1 33 ASP . B . 33 ASP b 1 15596 2 1 1 1 34 ILE . B . 34 ILE d 1 15596 2 1 1 1 35 ASN . B . 35 ASN c 1 15596 2 1 1 1 36 ALA . B . 36 ALA d 1 15596 2 1 1 1 37 ILE . B . 37 ILE d 1 15596 2 1 1 1 38 ILE . B . 38 ILE d 1 15596 2 1 1 1 39 PHE . B . 39 PHE d 1 15596 2 1 1 1 40 HIS . B . 40 HIS d 1 15596 2 1 1 1 41 THR . B . 41 THR f 1 15596 2 1 1 1 42 LYS . B . 42 LYS k 1 15596 2 1 1 1 43 LYS . B . 43 LYS o 1 15596 2 1 1 1 44 LYS . B . 44 LYS p 1 15596 2 1 1 1 45 LEU . B . 45 LEU a 1 15596 2 1 1 1 46 SER . B . 46 SER c 1 15596 2 1 1 1 47 VAL . B . 47 VAL d 1 15596 2 1 1 1 48 CYS . B . 48 CYS d 1 15596 2 1 1 1 49 ALA . B . 49 ALA d 1 15596 2 1 1 1 50 ASN . B . 50 ASN f 1 15596 2 1 1 1 51 PRO . B . 51 PRO k 1 15596 2 1 1 1 52 LYS . B . 52 LYS b 1 15596 2 1 1 1 53 GLN . B . 53 GLN m 1 15596 2 1 1 1 54 THR . B . 54 THR k 1 15596 2 1 1 1 55 TRP . B . 55 TRP l 1 15596 2 1 1 1 56 VAL . B . 56 VAL m 1 15596 2 1 1 1 57 LYS . B . 57 LYS m 1 15596 2 1 1 1 58 TYR . B . 58 TYR m 1 15596 2 1 1 1 59 ILE . B . 59 ILE m 1 15596 2 1 1 1 60 VAL . B . 60 VAL m 1 15596 2 1 1 1 61 ARG . B . 61 ARG m 1 15596 2 1 1 1 62 LEU . B . 62 LEU m 1 15596 2 1 1 1 63 LEU . B . 63 LEU m 1 15596 2 1 1 1 64 SER . B . 64 SER . 1 15596 2 1 1 1 65 LYS . B . 65 LYS . 1 15596 2 1 1 1 66 LYS . B . 66 LYS . 1 15596 2 1 1 1 67 VAL . B . 67 VAL . 1 15596 2 1 1 1 68 LYS . B . 68 LYS . 1 15596 2 1 1 1 69 ASN . B . 69 ASN . 1 15596 2 1 1 1 70 MET . B . 70 MET . 1 15596 2 stop_ save_