data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1vdp_7048#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1vds.ent _PB_list.Output_file_name bmr4562_1vds_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4562_1vds_PB.str _PB_list.AA_seq_one_letter_code KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL _PB_list.PB_seq_code zzdfklmmmmmmmnopgopghiafklmmmmmmmmnoopakbccddfkopacedjkopafklmpcehlaghiacfkopafklmmcfblklmmmmmmmmmmnonajmlpmklmmmmgopafklmmgoiazz _PB_list.PDB_ID 1VDS _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.219 _PB_list.PDBX_refine_ls_R_factor_R_work 0.185 _PB_list.PDBX_refine_ls_d_res_high 1.60 _PB_list.PDBX_refine_ls_d_res_low 9.88 _PB_list.Entry_ID 4562 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 LYS . A . 1 LYS . 1 4562 1 1 1 1 2 VAL . A . 2 VAL . 1 4562 1 1 1 1 3 PHE . A . 3 PHE d 1 4562 1 1 1 1 4 GLY . A . 4 GLY f 1 4562 1 1 1 1 5 ARG . A . 5 ARG k 1 4562 1 1 1 1 6 CYS . A . 6 CYS l 1 4562 1 1 1 1 7 GLU . A . 7 GLU m 1 4562 1 1 1 1 8 LEU . A . 8 LEU m 1 4562 1 1 1 1 9 ALA . A . 9 ALA m 1 4562 1 1 1 1 10 ALA . A . 10 ALA m 1 4562 1 1 1 1 11 ALA . A . 11 ALA m 1 4562 1 1 1 1 12 MET . A . 12 MET m 1 4562 1 1 1 1 13 LYS . A . 13 LYS m 1 4562 1 1 1 1 14 ARG . A . 14 ARG n 1 4562 1 1 1 1 15 HIS . A . 15 HIS o 1 4562 1 1 1 1 16 GLY . A . 16 GLY p 1 4562 1 1 1 1 17 LEU . A . 17 LEU g 1 4562 1 1 1 1 18 ASP . A . 18 ASP o 1 4562 1 1 1 1 19 ASN . A . 19 ASN p 1 4562 1 1 1 1 20 TYR . A . 20 TYR g 1 4562 1 1 1 1 21 ARG . A . 21 ARG h 1 4562 1 1 1 1 22 GLY . A . 22 GLY i 1 4562 1 1 1 1 23 TYR . A . 23 TYR a 1 4562 1 1 1 1 24 SER . A . 24 SER f 1 4562 1 1 1 1 25 LEU . A . 25 LEU k 1 4562 1 1 1 1 26 GLY . A . 26 GLY l 1 4562 1 1 1 1 27 ASN . A . 27 ASN m 1 4562 1 1 1 1 28 TRP . A . 28 TRP m 1 4562 1 1 1 1 29 VAL . A . 29 VAL m 1 4562 1 1 1 1 30 CYS . A . 30 CYS m 1 4562 1 1 1 1 31 ALA . A . 31 ALA m 1 4562 1 1 1 1 32 ALA . A . 32 ALA m 1 4562 1 1 1 1 33 LYS . A . 33 LYS m 1 4562 1 1 1 1 34 PHE . A . 34 PHE m 1 4562 1 1 1 1 35 GLU . A . 35 GLU n 1 4562 1 1 1 1 36 SER . A . 36 SER o 1 4562 1 1 1 1 37 ASN . A . 37 ASN o 1 4562 1 1 1 1 38 PHE . A . 38 PHE p 1 4562 1 1 1 1 39 ASN . A . 39 ASN a 1 4562 1 1 1 1 40 THR . A . 40 THR k 1 4562 1 1 1 1 41 GLN . A . 41 GLN b 1 4562 1 1 1 1 42 ALA . A . 42 ALA c 1 4562 1 1 1 1 43 THR . A . 43 THR c 1 4562 1 1 1 1 44 ASN . A . 44 ASN d 1 4562 1 1 1 1 45 ARG . A . 45 ARG d 1 4562 1 1 1 1 46 ASN . A . 46 ASN f 1 4562 1 1 1 1 47 THR . A . 47 THR k 1 4562 1 1 1 1 48 ASP . A . 48 ASP o 1 4562 1 1 1 1 49 GLY . A . 49 GLY p 1 4562 1 1 1 1 50 SER . A . 50 SER a 1 4562 1 1 1 1 51 THR . A . 51 THR c 1 4562 1 1 1 1 52 ASP . A . 52 ASP e 1 4562 1 1 1 1 53 TYR . A . 53 TYR d 1 4562 1 1 1 1 54 GLY . A . 54 GLY j 1 4562 1 1 1 1 55 ILE . A . 55 ILE k 1 4562 1 1 1 1 56 LEU . A . 56 LEU o 1 4562 1 1 1 1 57 GLN . A . 57 GLN p 1 4562 1 1 1 1 58 ILE . A . 58 ILE a 1 4562 1 1 1 1 59 ASN . A . 59 ASN f 1 4562 1 1 1 1 60 SER . A . 60 SER k 1 4562 1 1 1 1 61 ARG . A . 61 ARG l 1 4562 1 1 1 1 62 TRP . A . 62 TRP m 1 4562 1 1 1 1 63 TRP . A . 63 TRP p 1 4562 1 1 1 1 64 CYS . A . 64 CYS c 1 4562 1 1 1 1 65 ASN . A . 65 ASN e 1 4562 1 1 1 1 66 ASP . A . 66 ASP h 1 4562 1 1 1 1 67 GLY . A . 67 GLY l 1 4562 1 1 1 1 68 ARG . A . 68 ARG a 1 4562 1 1 1 1 69 THR . A . 69 THR g 1 4562 1 1 1 1 70 PRO . A . 70 PRO h 1 4562 1 1 1 1 71 GLY . A . 71 GLY i 1 4562 1 1 1 1 72 SER . A . 72 SER a 1 4562 1 1 1 1 73 ARG . A . 73 ARG c 1 4562 1 1 1 1 74 ASN . A . 74 ASN f 1 4562 1 1 1 1 75 LEU . A . 75 LEU k 1 4562 1 1 1 1 76 CYS . A . 76 CYS o 1 4562 1 1 1 1 77 ASN . A . 77 ASN p 1 4562 1 1 1 1 78 ILE . A . 78 ILE a 1 4562 1 1 1 1 79 PRO . A . 79 PRO f 1 4562 1 1 1 1 80 CYS . A . 80 CYS k 1 4562 1 1 1 1 81 SER . A . 81 SER l 1 4562 1 1 1 1 82 ALA . A . 82 ALA m 1 4562 1 1 1 1 83 LEU . A . 83 LEU m 1 4562 1 1 1 1 84 LEU . A . 84 LEU c 1 4562 1 1 1 1 85 SER . A . 85 SER f 1 4562 1 1 1 1 86 SER . A . 86 SER b 1 4562 1 1 1 1 87 ASP . A . 87 ASP l 1 4562 1 1 1 1 88 ILE . A . 88 ILE k 1 4562 1 1 1 1 89 THR . A . 89 THR l 1 4562 1 1 1 1 90 ALA . A . 90 ALA m 1 4562 1 1 1 1 91 SER . A . 91 SER m 1 4562 1 1 1 1 92 VAL . A . 92 VAL m 1 4562 1 1 1 1 93 ASN . A . 93 ASN m 1 4562 1 1 1 1 94 CYS . A . 94 CYS m 1 4562 1 1 1 1 95 ALA . A . 95 ALA m 1 4562 1 1 1 1 96 LYS . A . 96 LYS m 1 4562 1 1 1 1 97 LYS . A . 97 LYS m 1 4562 1 1 1 1 98 ILE . A . 98 ILE m 1 4562 1 1 1 1 99 VAL . A . 99 VAL m 1 4562 1 1 1 1 100 SER . A . 100 SER n 1 4562 1 1 1 1 101 ASP . A . 101 ASP o 1 4562 1 1 1 1 102 GLY . A . 102 GLY n 1 4562 1 1 1 1 103 ASN . A . 103 ASN a 1 4562 1 1 1 1 104 GLY . A . 104 GLY j 1 4562 1 1 1 1 105 MET . A . 105 MET m 1 4562 1 1 1 1 106 ASN . A . 106 ASN l 1 4562 1 1 1 1 107 ALA . A . 107 ALA p 1 4562 1 1 1 1 108 TRP . A . 108 TRP m 1 4562 1 1 1 1 109 VAL . A . 109 VAL k 1 4562 1 1 1 1 110 ALA . A . 110 ALA l 1 4562 1 1 1 1 111 TRP . A . 111 TRP m 1 4562 1 1 1 1 112 ARG . A . 112 ARG m 1 4562 1 1 1 1 113 ASN . A . 113 ASN m 1 4562 1 1 1 1 114 ARG . A . 114 ARG m 1 4562 1 1 1 1 115 CYS . A . 115 CYS g 1 4562 1 1 1 1 116 LYS . A . 116 LYS o 1 4562 1 1 1 1 117 GLY . A . 117 GLY p 1 4562 1 1 1 1 118 THR . A . 118 THR a 1 4562 1 1 1 1 119 ASP . A . 119 ASP f 1 4562 1 1 1 1 120 VAL . A . 120 VAL k 1 4562 1 1 1 1 121 GLN . A . 121 GLN l 1 4562 1 1 1 1 122 ALA . A . 122 ALA m 1 4562 1 1 1 1 123 TRP . A . 123 TRP m 1 4562 1 1 1 1 124 ILE . A . 124 ILE g 1 4562 1 1 1 1 125 ARG . A . 125 ARG o 1 4562 1 1 1 1 126 GLY . A . 126 GLY i 1 4562 1 1 1 1 127 CYS . A . 127 CYS a 1 4562 1 1 1 1 128 ARG . A . 128 ARG . 1 4562 1 1 1 1 129 LEU . A . 129 LEU . 1 4562 1 stop_ save_