data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1byf_5841#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1byf.ent _PB_list.Output_file_name bmr4782_1byf_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4782_1byf_PB.str _PB_list.AA_seq_one_letter_code DYEILFSDETMNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYWVGADNLQDGAYNFLWNDGVSLPTDSDLWSPNEPSNPQSWQLCVQIWSKYNLLDDVGCGGARRVICEKELD _PB_list.PB_seq_code zzddddfbdcdfklmmmmmmmnopacdfklmmgmklmmmmmmmmmmnopacdddddfklngpjlccdfkopacdfkbckbcghiafbdfkbccdddddfklopacdddfkbccddddddddzz _PB_list.PDB_ID 1BYF _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.25 _PB_list.PDBX_refine_ls_R_factor_R_work 0.207 _PB_list.PDBX_refine_ls_d_res_high 2.0 _PB_list.PDBX_refine_ls_d_res_low 35.0 _PB_list.Entry_ID 4782 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 MET . A . 1 MET . 1 4782 1 1 1 1 2 ASP . A . 2 ASP . 1 4782 1 1 1 1 3 TYR . A . 3 TYR . 1 4782 1 1 1 1 4 GLU . A . 4 GLU d 1 4782 1 1 1 1 5 ILE . A . 5 ILE d 1 4782 1 1 1 1 6 LEU . A . 6 LEU d 1 4782 1 1 1 1 7 PHE . A . 7 PHE d 1 4782 1 1 1 1 8 SER . A . 8 SER f 1 4782 1 1 1 1 9 ASP . A . 9 ASP b 1 4782 1 1 1 1 10 GLU . A . 10 GLU d 1 4782 1 1 1 1 11 THR . A . 11 THR c 1 4782 1 1 1 1 12 MET . A . 12 MET d 1 4782 1 1 1 1 13 ASN . A . 13 ASN f 1 4782 1 1 1 1 14 TYR . A . 14 TYR k 1 4782 1 1 1 1 15 ALA . A . 15 ALA l 1 4782 1 1 1 1 16 ASP . A . 16 ASP m 1 4782 1 1 1 1 17 ALA . A . 17 ALA m 1 4782 1 1 1 1 18 GLY . A . 18 GLY m 1 4782 1 1 1 1 19 THR . A . 19 THR m 1 4782 1 1 1 1 20 TYR . A . 20 TYR m 1 4782 1 1 1 1 21 CYS . A . 21 CYS m 1 4782 1 1 1 1 22 GLN . A . 22 GLN m 1 4782 1 1 1 1 23 SER . A . 23 SER n 1 4782 1 1 1 1 24 ARG . A . 24 ARG o 1 4782 1 1 1 1 25 GLY . A . 25 GLY p 1 4782 1 1 1 1 26 MET . A . 26 MET a 1 4782 1 1 1 1 27 ALA . A . 27 ALA c 1 4782 1 1 1 1 28 LEU . A . 28 LEU d 1 4782 1 1 1 1 29 VAL . A . 29 VAL f 1 4782 1 1 1 1 30 SER . A . 30 SER k 1 4782 1 1 1 1 31 SER . A . 31 SER l 1 4782 1 1 1 1 32 ALA . A . 32 ALA m 1 4782 1 1 1 1 33 MET . A . 33 MET m 1 4782 1 1 1 1 34 ARG . A . 34 ARG g 1 4782 1 1 1 1 35 ASP . A . 35 ASP m 1 4782 1 1 1 1 36 SER . A . 36 SER k 1 4782 1 1 1 1 37 THR . A . 37 THR l 1 4782 1 1 1 1 38 MET . A . 38 MET m 1 4782 1 1 1 1 39 VAL . A . 39 VAL m 1 4782 1 1 1 1 40 LYS . A . 40 LYS m 1 4782 1 1 1 1 41 ALA . A . 41 ALA m 1 4782 1 1 1 1 42 ILE . A . 42 ILE m 1 4782 1 1 1 1 43 LEU . A . 43 LEU m 1 4782 1 1 1 1 44 ALA . A . 44 ALA m 1 4782 1 1 1 1 45 PHE . A . 45 PHE m 1 4782 1 1 1 1 46 THR . A . 46 THR m 1 4782 1 1 1 1 47 GLU . A . 47 GLU m 1 4782 1 1 1 1 48 VAL . A . 48 VAL n 1 4782 1 1 1 1 49 LYS . A . 49 LYS o 1 4782 1 1 1 1 50 GLY . A . 50 GLY p 1 4782 1 1 1 1 51 HIS . A . 51 HIS a 1 4782 1 1 1 1 52 ASP . A . 52 ASP c 1 4782 1 1 1 1 53 TYR . A . 53 TYR d 1 4782 1 1 1 1 54 TRP . A . 54 TRP d 1 4782 1 1 1 1 55 VAL . A . 55 VAL d 1 4782 1 1 1 1 56 GLY . A . 56 GLY d 1 4782 1 1 1 1 57 ALA . A . 57 ALA d 1 4782 1 1 1 1 58 ASP . A . 58 ASP f 1 4782 1 1 1 1 59 ASN . A . 59 ASN k 1 4782 1 1 1 1 60 LEU . A . 60 LEU l 1 4782 1 1 1 1 61 GLN . A . 61 GLN n 1 4782 1 1 1 1 62 ASP . A . 62 ASP g 1 4782 1 1 1 1 63 GLY . A . 63 GLY p 1 4782 1 1 1 1 64 ALA . A . 64 ALA j 1 4782 1 1 1 1 65 TYR . A . 65 TYR l 1 4782 1 1 1 1 66 ASN . A . 66 ASN c 1 4782 1 1 1 1 67 PHE . A . 67 PHE c 1 4782 1 1 1 1 68 LEU . A . 68 LEU d 1 4782 1 1 1 1 69 TRP . A . 69 TRP f 1 4782 1 1 1 1 70 ASN . A . 70 ASN k 1 4782 1 1 1 1 71 ASP . A . 71 ASP o 1 4782 1 1 1 1 72 GLY . A . 72 GLY p 1 4782 1 1 1 1 73 VAL . A . 73 VAL a 1 4782 1 1 1 1 74 SER . A . 74 SER c 1 4782 1 1 1 1 75 LEU . A . 75 LEU d 1 4782 1 1 1 1 76 PRO . A . 76 PRO f 1 4782 1 1 1 1 77 THR . A . 77 THR k 1 4782 1 1 1 1 78 ASP . A . 78 ASP b 1 4782 1 1 1 1 79 SER . A . 79 SER c 1 4782 1 1 1 1 80 ASP . A . 80 ASP k 1 4782 1 1 1 1 81 LEU . A . 81 LEU b 1 4782 1 1 1 1 82 TRP . A . 82 TRP c 1 4782 1 1 1 1 83 SER . A . 83 SER g 1 4782 1 1 1 1 84 PRO . A . 84 PRO h 1 4782 1 1 1 1 85 ASN . A . 85 ASN i 1 4782 1 1 1 1 86 GLU . A . 86 GLU a 1 4782 1 1 1 1 87 PRO . A . 87 PRO f 1 4782 1 1 1 1 88 SER . A . 88 SER b 1 4782 1 1 1 1 89 ASN . A . 89 ASN d 1 4782 1 1 1 1 90 PRO . A . 90 PRO f 1 4782 1 1 1 1 91 GLN . A . 91 GLN k 1 4782 1 1 1 1 92 SER . A . 92 SER b 1 4782 1 1 1 1 93 TRP . A . 93 TRP c 1 4782 1 1 1 1 94 GLN . A . 94 GLN c 1 4782 1 1 1 1 95 LEU . A . 95 LEU d 1 4782 1 1 1 1 96 CYS . A . 96 CYS d 1 4782 1 1 1 1 97 VAL . A . 97 VAL d 1 4782 1 1 1 1 98 GLN . A . 98 GLN d 1 4782 1 1 1 1 99 ILE . A . 99 ILE d 1 4782 1 1 1 1 100 TRP . A . 100 TRP f 1 4782 1 1 1 1 101 SER . A . 101 SER k 1 4782 1 1 1 1 102 LYS . A . 102 LYS l 1 4782 1 1 1 1 103 TYR . A . 103 TYR o 1 4782 1 1 1 1 104 ASN . A . 104 ASN p 1 4782 1 1 1 1 105 LEU . A . 105 LEU a 1 4782 1 1 1 1 106 LEU . A . 106 LEU c 1 4782 1 1 1 1 107 ASP . A . 107 ASP d 1 4782 1 1 1 1 108 ASP . A . 108 ASP d 1 4782 1 1 1 1 109 VAL . A . 109 VAL d 1 4782 1 1 1 1 110 GLY . A . 110 GLY f 1 4782 1 1 1 1 111 CYS . A . 111 CYS k 1 4782 1 1 1 1 112 GLY . A . 112 GLY b 1 4782 1 1 1 1 113 GLY . A . 113 GLY c 1 4782 1 1 1 1 114 ALA . A . 114 ALA c 1 4782 1 1 1 1 115 ARG . A . 115 ARG d 1 4782 1 1 1 1 116 ARG . A . 116 ARG d 1 4782 1 1 1 1 117 VAL . A . 117 VAL d 1 4782 1 1 1 1 118 ILE . A . 118 ILE d 1 4782 1 1 1 1 119 CYS . A . 119 CYS d 1 4782 1 1 1 1 120 GLU . A . 120 GLU d 1 4782 1 1 1 1 121 LYS . A . 121 LYS d 1 4782 1 1 1 1 122 GLU . A . 122 GLU d 1 4782 1 1 1 1 123 LEU . A . 123 LEU . 1 4782 1 1 1 1 124 ASP . A . 124 ASP . 1 4782 1 1 1 1 125 ASP . A . 125 ASP . 1 4782 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1byf_5841#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1byf.ent _PB_list.Output_file_name bmr4782_1byf_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4782_1byf_PB.str _PB_list.AA_seq_one_letter_code DYEILFSDETMNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYWVGADNLQDGAYNFLWNDGVSLPTDSDLWSPNEPSNPQSWQLCVQIWSKYNLLDDVGCGGARRVICEKELD _PB_list.PB_seq_code zzddddfbdcdfklmmmmmmmnopacdfklmmmmklmmmmmmmmmmnopacdddddfklngpjldcdfkopacdfkbckbcghiafbdfkbccdddddfklopacdddfkbccdddddddezz _PB_list.PDB_ID 1BYF _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.25 _PB_list.PDBX_refine_ls_R_factor_R_work 0.207 _PB_list.PDBX_refine_ls_d_res_high 2.0 _PB_list.PDBX_refine_ls_d_res_low 35.0 _PB_list.Entry_ID 4782 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 MET . B . 1 MET . 1 4782 2 1 1 1 2 ASP . B . 2 ASP . 1 4782 2 1 1 1 3 TYR . B . 3 TYR . 1 4782 2 1 1 1 4 GLU . B . 4 GLU d 1 4782 2 1 1 1 5 ILE . B . 5 ILE d 1 4782 2 1 1 1 6 LEU . B . 6 LEU d 1 4782 2 1 1 1 7 PHE . B . 7 PHE d 1 4782 2 1 1 1 8 SER . B . 8 SER f 1 4782 2 1 1 1 9 ASP . B . 9 ASP b 1 4782 2 1 1 1 10 GLU . B . 10 GLU d 1 4782 2 1 1 1 11 THR . B . 11 THR c 1 4782 2 1 1 1 12 MET . B . 12 MET d 1 4782 2 1 1 1 13 ASN . B . 13 ASN f 1 4782 2 1 1 1 14 TYR . B . 14 TYR k 1 4782 2 1 1 1 15 ALA . B . 15 ALA l 1 4782 2 1 1 1 16 ASP . B . 16 ASP m 1 4782 2 1 1 1 17 ALA . B . 17 ALA m 1 4782 2 1 1 1 18 GLY . B . 18 GLY m 1 4782 2 1 1 1 19 THR . B . 19 THR m 1 4782 2 1 1 1 20 TYR . B . 20 TYR m 1 4782 2 1 1 1 21 CYS . B . 21 CYS m 1 4782 2 1 1 1 22 GLN . B . 22 GLN m 1 4782 2 1 1 1 23 SER . B . 23 SER n 1 4782 2 1 1 1 24 ARG . B . 24 ARG o 1 4782 2 1 1 1 25 GLY . B . 25 GLY p 1 4782 2 1 1 1 26 MET . B . 26 MET a 1 4782 2 1 1 1 27 ALA . B . 27 ALA c 1 4782 2 1 1 1 28 LEU . B . 28 LEU d 1 4782 2 1 1 1 29 VAL . B . 29 VAL f 1 4782 2 1 1 1 30 SER . B . 30 SER k 1 4782 2 1 1 1 31 SER . B . 31 SER l 1 4782 2 1 1 1 32 ALA . B . 32 ALA m 1 4782 2 1 1 1 33 MET . B . 33 MET m 1 4782 2 1 1 1 34 ARG . B . 34 ARG m 1 4782 2 1 1 1 35 ASP . B . 35 ASP m 1 4782 2 1 1 1 36 SER . B . 36 SER k 1 4782 2 1 1 1 37 THR . B . 37 THR l 1 4782 2 1 1 1 38 MET . B . 38 MET m 1 4782 2 1 1 1 39 VAL . B . 39 VAL m 1 4782 2 1 1 1 40 LYS . B . 40 LYS m 1 4782 2 1 1 1 41 ALA . B . 41 ALA m 1 4782 2 1 1 1 42 ILE . B . 42 ILE m 1 4782 2 1 1 1 43 LEU . B . 43 LEU m 1 4782 2 1 1 1 44 ALA . B . 44 ALA m 1 4782 2 1 1 1 45 PHE . B . 45 PHE m 1 4782 2 1 1 1 46 THR . B . 46 THR m 1 4782 2 1 1 1 47 GLU . B . 47 GLU m 1 4782 2 1 1 1 48 VAL . B . 48 VAL n 1 4782 2 1 1 1 49 LYS . B . 49 LYS o 1 4782 2 1 1 1 50 GLY . B . 50 GLY p 1 4782 2 1 1 1 51 HIS . B . 51 HIS a 1 4782 2 1 1 1 52 ASP . B . 52 ASP c 1 4782 2 1 1 1 53 TYR . B . 53 TYR d 1 4782 2 1 1 1 54 TRP . B . 54 TRP d 1 4782 2 1 1 1 55 VAL . B . 55 VAL d 1 4782 2 1 1 1 56 GLY . B . 56 GLY d 1 4782 2 1 1 1 57 ALA . B . 57 ALA d 1 4782 2 1 1 1 58 ASP . B . 58 ASP f 1 4782 2 1 1 1 59 ASN . B . 59 ASN k 1 4782 2 1 1 1 60 LEU . B . 60 LEU l 1 4782 2 1 1 1 61 GLN . B . 61 GLN n 1 4782 2 1 1 1 62 ASP . B . 62 ASP g 1 4782 2 1 1 1 63 GLY . B . 63 GLY p 1 4782 2 1 1 1 64 ALA . B . 64 ALA j 1 4782 2 1 1 1 65 TYR . B . 65 TYR l 1 4782 2 1 1 1 66 ASN . B . 66 ASN d 1 4782 2 1 1 1 67 PHE . B . 67 PHE c 1 4782 2 1 1 1 68 LEU . B . 68 LEU d 1 4782 2 1 1 1 69 TRP . B . 69 TRP f 1 4782 2 1 1 1 70 ASN . B . 70 ASN k 1 4782 2 1 1 1 71 ASP . B . 71 ASP o 1 4782 2 1 1 1 72 GLY . B . 72 GLY p 1 4782 2 1 1 1 73 VAL . B . 73 VAL a 1 4782 2 1 1 1 74 SER . B . 74 SER c 1 4782 2 1 1 1 75 LEU . B . 75 LEU d 1 4782 2 1 1 1 76 PRO . B . 76 PRO f 1 4782 2 1 1 1 77 THR . B . 77 THR k 1 4782 2 1 1 1 78 ASP . B . 78 ASP b 1 4782 2 1 1 1 79 SER . B . 79 SER c 1 4782 2 1 1 1 80 ASP . B . 80 ASP k 1 4782 2 1 1 1 81 LEU . B . 81 LEU b 1 4782 2 1 1 1 82 TRP . B . 82 TRP c 1 4782 2 1 1 1 83 SER . B . 83 SER g 1 4782 2 1 1 1 84 PRO . B . 84 PRO h 1 4782 2 1 1 1 85 ASN . B . 85 ASN i 1 4782 2 1 1 1 86 GLU . B . 86 GLU a 1 4782 2 1 1 1 87 PRO . B . 87 PRO f 1 4782 2 1 1 1 88 SER . B . 88 SER b 1 4782 2 1 1 1 89 ASN . B . 89 ASN d 1 4782 2 1 1 1 90 PRO . B . 90 PRO f 1 4782 2 1 1 1 91 GLN . B . 91 GLN k 1 4782 2 1 1 1 92 SER . B . 92 SER b 1 4782 2 1 1 1 93 TRP . B . 93 TRP c 1 4782 2 1 1 1 94 GLN . B . 94 GLN c 1 4782 2 1 1 1 95 LEU . B . 95 LEU d 1 4782 2 1 1 1 96 CYS . B . 96 CYS d 1 4782 2 1 1 1 97 VAL . B . 97 VAL d 1 4782 2 1 1 1 98 GLN . B . 98 GLN d 1 4782 2 1 1 1 99 ILE . B . 99 ILE d 1 4782 2 1 1 1 100 TRP . B . 100 TRP f 1 4782 2 1 1 1 101 SER . B . 101 SER k 1 4782 2 1 1 1 102 LYS . B . 102 LYS l 1 4782 2 1 1 1 103 TYR . B . 103 TYR o 1 4782 2 1 1 1 104 ASN . B . 104 ASN p 1 4782 2 1 1 1 105 LEU . B . 105 LEU a 1 4782 2 1 1 1 106 LEU . B . 106 LEU c 1 4782 2 1 1 1 107 ASP . B . 107 ASP d 1 4782 2 1 1 1 108 ASP . B . 108 ASP d 1 4782 2 1 1 1 109 VAL . B . 109 VAL d 1 4782 2 1 1 1 110 GLY . B . 110 GLY f 1 4782 2 1 1 1 111 CYS . B . 111 CYS k 1 4782 2 1 1 1 112 GLY . B . 112 GLY b 1 4782 2 1 1 1 113 GLY . B . 113 GLY c 1 4782 2 1 1 1 114 ALA . B . 114 ALA c 1 4782 2 1 1 1 115 ARG . B . 115 ARG d 1 4782 2 1 1 1 116 ARG . B . 116 ARG d 1 4782 2 1 1 1 117 VAL . B . 117 VAL d 1 4782 2 1 1 1 118 ILE . B . 118 ILE d 1 4782 2 1 1 1 119 CYS . B . 119 CYS d 1 4782 2 1 1 1 120 GLU . B . 120 GLU d 1 4782 2 1 1 1 121 LYS . B . 121 LYS d 1 4782 2 1 1 1 122 GLU . B . 122 GLU e 1 4782 2 1 1 1 123 LEU . B . 123 LEU . 1 4782 2 1 1 1 124 ASP . B . 124 ASP . 1 4782 2 1 1 1 125 ASP . B . 125 ASP . 1 4782 2 stop_ save_