data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db3cyz_9581#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb3cyz.ent _PB_list.Output_file_name bmr4940_3cyz_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4940_3cyz_PB.str _PB_list.AA_seq_one_letter_code WVPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI _PB_list.PB_seq_code zzdddddfklmmmmmmmmmnopafklmmmmmnopacddfklmmmmmmmmmmnopacceopacfklmmmmpcfklmmmmmmmmmmmpccddjbfklmmmmmmmmmmmmmmmbccdzz _PB_list.PDB_ID 3CYZ _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.19964 _PB_list.PDBX_refine_ls_R_factor_R_work 0.16181 _PB_list.PDBX_refine_ls_d_res_high 1.80 _PB_list.PDBX_refine_ls_d_res_low 20.00 _PB_list.Entry_ID 4940 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . A . 1 ALA . 1 4940 1 1 1 1 2 PRO . A . 2 PRO . 1 4940 1 1 1 1 3 ASP . A . 3 ASP . 1 4940 1 1 1 1 4 TRP . A . 4 TRP . 1 4940 1 1 1 1 5 VAL . A . 5 VAL . 1 4940 1 1 1 1 6 PRO . A . 6 PRO d 1 4940 1 1 1 1 7 PRO . A . 7 PRO d 1 4940 1 1 1 1 8 GLU . A . 8 GLU d 1 4940 1 1 1 1 9 VAL . A . 9 VAL d 1 4940 1 1 1 1 10 PHE . A . 10 PHE d 1 4940 1 1 1 1 11 ASP . A . 11 ASP f 1 4940 1 1 1 1 12 LEU . A . 12 LEU k 1 4940 1 1 1 1 13 VAL . A . 13 VAL l 1 4940 1 1 1 1 14 ALA . A . 14 ALA m 1 4940 1 1 1 1 15 GLU . A . 15 GLU m 1 4940 1 1 1 1 16 ASP . A . 16 ASP m 1 4940 1 1 1 1 17 LYS . A . 17 LYS m 1 4940 1 1 1 1 18 ALA . A . 18 ALA m 1 4940 1 1 1 1 19 ARG . A . 19 ARG m 1 4940 1 1 1 1 20 CYS . A . 20 CYS m 1 4940 1 1 1 1 21 MET . A . 21 MET m 1 4940 1 1 1 1 22 SER . A . 22 SER m 1 4940 1 1 1 1 23 GLU . A . 23 GLU n 1 4940 1 1 1 1 24 HIS . A . 24 HIS o 1 4940 1 1 1 1 25 GLY . A . 25 GLY p 1 4940 1 1 1 1 26 THR . A . 26 THR a 1 4940 1 1 1 1 27 THR . A . 27 THR f 1 4940 1 1 1 1 28 GLN . A . 28 GLN k 1 4940 1 1 1 1 29 ALA . A . 29 ALA l 1 4940 1 1 1 1 30 GLN . A . 30 GLN m 1 4940 1 1 1 1 31 ILE . A . 31 ILE m 1 4940 1 1 1 1 32 ASP . A . 32 ASP m 1 4940 1 1 1 1 33 ASP . A . 33 ASP m 1 4940 1 1 1 1 34 VAL . A . 34 VAL m 1 4940 1 1 1 1 35 ASP . A . 35 ASP n 1 4940 1 1 1 1 36 LYS . A . 36 LYS o 1 4940 1 1 1 1 37 GLY . A . 37 GLY p 1 4940 1 1 1 1 38 ASN . A . 38 ASN a 1 4940 1 1 1 1 39 LEU . A . 39 LEU c 1 4940 1 1 1 1 40 VAL . A . 40 VAL d 1 4940 1 1 1 1 41 ASN . A . 41 ASN d 1 4940 1 1 1 1 42 GLU . A . 42 GLU f 1 4940 1 1 1 1 43 PRO . A . 43 PRO k 1 4940 1 1 1 1 44 SER . A . 44 SER l 1 4940 1 1 1 1 45 ILE . A . 45 ILE m 1 4940 1 1 1 1 46 THR . A . 46 THR m 1 4940 1 1 1 1 47 CYS . A . 47 CYS m 1 4940 1 1 1 1 48 TYR . A . 48 TYR m 1 4940 1 1 1 1 49 MET . A . 49 MET m 1 4940 1 1 1 1 50 TYR . A . 50 TYR m 1 4940 1 1 1 1 51 CYS . A . 51 CYS m 1 4940 1 1 1 1 52 LEU . A . 52 LEU m 1 4940 1 1 1 1 53 LEU . A . 53 LEU m 1 4940 1 1 1 1 54 GLU . A . 54 GLU m 1 4940 1 1 1 1 55 ALA . A . 55 ALA n 1 4940 1 1 1 1 56 PHE . A . 56 PHE o 1 4940 1 1 1 1 57 SER . A . 57 SER p 1 4940 1 1 1 1 58 LEU . A . 58 LEU a 1 4940 1 1 1 1 59 VAL . A . 59 VAL c 1 4940 1 1 1 1 60 ASP . A . 60 ASP c 1 4940 1 1 1 1 61 ASP . A . 61 ASP e 1 4940 1 1 1 1 62 GLU . A . 62 GLU o 1 4940 1 1 1 1 63 ALA . A . 63 ALA p 1 4940 1 1 1 1 64 ASN . A . 64 ASN a 1 4940 1 1 1 1 65 VAL . A . 65 VAL c 1 4940 1 1 1 1 66 ASP . A . 66 ASP f 1 4940 1 1 1 1 67 GLU . A . 67 GLU k 1 4940 1 1 1 1 68 ASP . A . 68 ASP l 1 4940 1 1 1 1 69 ILE . A . 69 ILE m 1 4940 1 1 1 1 70 MET . A . 70 MET m 1 4940 1 1 1 1 71 LEU . A . 71 LEU m 1 4940 1 1 1 1 72 GLY . A . 72 GLY m 1 4940 1 1 1 1 73 LEU . A . 73 LEU p 1 4940 1 1 1 1 74 LEU . A . 74 LEU c 1 4940 1 1 1 1 75 PRO . A . 75 PRO f 1 4940 1 1 1 1 76 ASP . A . 76 ASP k 1 4940 1 1 1 1 77 GLN . A . 77 GLN l 1 4940 1 1 1 1 78 LEU . A . 78 LEU m 1 4940 1 1 1 1 79 GLN . A . 79 GLN m 1 4940 1 1 1 1 80 GLU . A . 80 GLU m 1 4940 1 1 1 1 81 ARG . A . 81 ARG m 1 4940 1 1 1 1 82 ALA . A . 82 ALA m 1 4940 1 1 1 1 83 GLN . A . 83 GLN m 1 4940 1 1 1 1 84 SER . A . 84 SER m 1 4940 1 1 1 1 85 VAL . A . 85 VAL m 1 4940 1 1 1 1 86 MET . A . 86 MET m 1 4940 1 1 1 1 87 GLY . A . 87 GLY m 1 4940 1 1 1 1 88 LYS . A . 88 LYS m 1 4940 1 1 1 1 89 CYS . A . 89 CYS p 1 4940 1 1 1 1 90 LEU . A . 90 LEU c 1 4940 1 1 1 1 91 PRO . A . 91 PRO c 1 4940 1 1 1 1 92 THR . A . 92 THR d 1 4940 1 1 1 1 93 SER . A . 93 SER d 1 4940 1 1 1 1 94 GLY . A . 94 GLY j 1 4940 1 1 1 1 95 SER . A . 95 SER b 1 4940 1 1 1 1 96 ASP . A . 96 ASP f 1 4940 1 1 1 1 97 ASN . A . 97 ASN k 1 4940 1 1 1 1 98 CYS . A . 98 CYS l 1 4940 1 1 1 1 99 ASN . A . 99 ASN m 1 4940 1 1 1 1 100 LYS . A . 100 LYS m 1 4940 1 1 1 1 101 ILE . A . 101 ILE m 1 4940 1 1 1 1 102 TYR . A . 102 TYR m 1 4940 1 1 1 1 103 ASN . A . 103 ASN m 1 4940 1 1 1 1 104 LEU . A . 104 LEU m 1 4940 1 1 1 1 105 ALA . A . 105 ALA m 1 4940 1 1 1 1 106 LYS . A . 106 LYS m 1 4940 1 1 1 1 107 CYS . A . 107 CYS m 1 4940 1 1 1 1 108 VAL . A . 108 VAL m 1 4940 1 1 1 1 109 GLN . A . 109 GLN m 1 4940 1 1 1 1 110 GLU . A . 110 GLU m 1 4940 1 1 1 1 111 SER . A . 111 SER m 1 4940 1 1 1 1 112 ALA . A . 112 ALA m 1 4940 1 1 1 1 113 PRO . A . 113 PRO m 1 4940 1 1 1 1 114 ASP . A . 114 ASP b 1 4940 1 1 1 1 115 VAL . A . 115 VAL c 1 4940 1 1 1 1 116 TRP . A . 116 TRP c 1 4940 1 1 1 1 117 PHE . A . 117 PHE d 1 4940 1 1 1 1 118 VAL . A . 118 VAL . 1 4940 1 1 1 1 119 ILE . A . 119 ILE . 1 4940 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db3cyz_9581#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb3cyz.ent _PB_list.Output_file_name bmr4940_3cyz_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4940_3cyz_PB.str _PB_list.AA_seq_one_letter_code VPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI _PB_list.PB_seq_code zzddddfklmmmmmmmmmnopafklmmmmmnopacddfklmmmmmmmmmmnopacfkopacfklmmmmpcfklmmmmmmmmmmmpccddjbfklmmmmmmmmmmmmmmmbccdzz _PB_list.PDB_ID 3CYZ _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.19964 _PB_list.PDBX_refine_ls_R_factor_R_work 0.16181 _PB_list.PDBX_refine_ls_d_res_high 1.80 _PB_list.PDBX_refine_ls_d_res_low 20.00 _PB_list.Entry_ID 4940 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . B . 1 ALA . 1 4940 2 1 1 1 2 PRO . B . 2 PRO . 1 4940 2 1 1 1 3 ASP . B . 3 ASP . 1 4940 2 1 1 1 4 TRP . B . 4 TRP . 1 4940 2 1 1 1 5 VAL . B . 5 VAL . 1 4940 2 1 1 1 6 PRO . B . 6 PRO . 1 4940 2 1 1 1 7 PRO . B . 7 PRO d 1 4940 2 1 1 1 8 GLU . B . 8 GLU d 1 4940 2 1 1 1 9 VAL . B . 9 VAL d 1 4940 2 1 1 1 10 PHE . B . 10 PHE d 1 4940 2 1 1 1 11 ASP . B . 11 ASP f 1 4940 2 1 1 1 12 LEU . B . 12 LEU k 1 4940 2 1 1 1 13 VAL . B . 13 VAL l 1 4940 2 1 1 1 14 ALA . B . 14 ALA m 1 4940 2 1 1 1 15 GLU . B . 15 GLU m 1 4940 2 1 1 1 16 ASP . B . 16 ASP m 1 4940 2 1 1 1 17 LYS . B . 17 LYS m 1 4940 2 1 1 1 18 ALA . B . 18 ALA m 1 4940 2 1 1 1 19 ARG . B . 19 ARG m 1 4940 2 1 1 1 20 CYS . B . 20 CYS m 1 4940 2 1 1 1 21 MET . B . 21 MET m 1 4940 2 1 1 1 22 SER . B . 22 SER m 1 4940 2 1 1 1 23 GLU . B . 23 GLU n 1 4940 2 1 1 1 24 HIS . B . 24 HIS o 1 4940 2 1 1 1 25 GLY . B . 25 GLY p 1 4940 2 1 1 1 26 THR . B . 26 THR a 1 4940 2 1 1 1 27 THR . B . 27 THR f 1 4940 2 1 1 1 28 GLN . B . 28 GLN k 1 4940 2 1 1 1 29 ALA . B . 29 ALA l 1 4940 2 1 1 1 30 GLN . B . 30 GLN m 1 4940 2 1 1 1 31 ILE . B . 31 ILE m 1 4940 2 1 1 1 32 ASP . B . 32 ASP m 1 4940 2 1 1 1 33 ASP . B . 33 ASP m 1 4940 2 1 1 1 34 VAL . B . 34 VAL m 1 4940 2 1 1 1 35 ASP . B . 35 ASP n 1 4940 2 1 1 1 36 LYS . B . 36 LYS o 1 4940 2 1 1 1 37 GLY . B . 37 GLY p 1 4940 2 1 1 1 38 ASN . B . 38 ASN a 1 4940 2 1 1 1 39 LEU . B . 39 LEU c 1 4940 2 1 1 1 40 VAL . B . 40 VAL d 1 4940 2 1 1 1 41 ASN . B . 41 ASN d 1 4940 2 1 1 1 42 GLU . B . 42 GLU f 1 4940 2 1 1 1 43 PRO . B . 43 PRO k 1 4940 2 1 1 1 44 SER . B . 44 SER l 1 4940 2 1 1 1 45 ILE . B . 45 ILE m 1 4940 2 1 1 1 46 THR . B . 46 THR m 1 4940 2 1 1 1 47 CYS . B . 47 CYS m 1 4940 2 1 1 1 48 TYR . B . 48 TYR m 1 4940 2 1 1 1 49 MET . B . 49 MET m 1 4940 2 1 1 1 50 TYR . B . 50 TYR m 1 4940 2 1 1 1 51 CYS . B . 51 CYS m 1 4940 2 1 1 1 52 LEU . B . 52 LEU m 1 4940 2 1 1 1 53 LEU . B . 53 LEU m 1 4940 2 1 1 1 54 GLU . B . 54 GLU m 1 4940 2 1 1 1 55 ALA . B . 55 ALA n 1 4940 2 1 1 1 56 PHE . B . 56 PHE o 1 4940 2 1 1 1 57 SER . B . 57 SER p 1 4940 2 1 1 1 58 LEU . B . 58 LEU a 1 4940 2 1 1 1 59 VAL . B . 59 VAL c 1 4940 2 1 1 1 60 ASP . B . 60 ASP f 1 4940 2 1 1 1 61 ASP . B . 61 ASP k 1 4940 2 1 1 1 62 GLU . B . 62 GLU o 1 4940 2 1 1 1 63 ALA . B . 63 ALA p 1 4940 2 1 1 1 64 ASN . B . 64 ASN a 1 4940 2 1 1 1 65 VAL . B . 65 VAL c 1 4940 2 1 1 1 66 ASP . B . 66 ASP f 1 4940 2 1 1 1 67 GLU . B . 67 GLU k 1 4940 2 1 1 1 68 ASP . B . 68 ASP l 1 4940 2 1 1 1 69 ILE . B . 69 ILE m 1 4940 2 1 1 1 70 MET . B . 70 MET m 1 4940 2 1 1 1 71 LEU . B . 71 LEU m 1 4940 2 1 1 1 72 GLY . B . 72 GLY m 1 4940 2 1 1 1 73 LEU . B . 73 LEU p 1 4940 2 1 1 1 74 LEU . B . 74 LEU c 1 4940 2 1 1 1 75 PRO . B . 75 PRO f 1 4940 2 1 1 1 76 ASP . B . 76 ASP k 1 4940 2 1 1 1 77 GLN . B . 77 GLN l 1 4940 2 1 1 1 78 LEU . B . 78 LEU m 1 4940 2 1 1 1 79 GLN . B . 79 GLN m 1 4940 2 1 1 1 80 GLU . B . 80 GLU m 1 4940 2 1 1 1 81 ARG . B . 81 ARG m 1 4940 2 1 1 1 82 ALA . B . 82 ALA m 1 4940 2 1 1 1 83 GLN . B . 83 GLN m 1 4940 2 1 1 1 84 SER . B . 84 SER m 1 4940 2 1 1 1 85 VAL . B . 85 VAL m 1 4940 2 1 1 1 86 MET . B . 86 MET m 1 4940 2 1 1 1 87 GLY . B . 87 GLY m 1 4940 2 1 1 1 88 LYS . B . 88 LYS m 1 4940 2 1 1 1 89 CYS . B . 89 CYS p 1 4940 2 1 1 1 90 LEU . B . 90 LEU c 1 4940 2 1 1 1 91 PRO . B . 91 PRO c 1 4940 2 1 1 1 92 THR . B . 92 THR d 1 4940 2 1 1 1 93 SER . B . 93 SER d 1 4940 2 1 1 1 94 GLY . B . 94 GLY j 1 4940 2 1 1 1 95 SER . B . 95 SER b 1 4940 2 1 1 1 96 ASP . B . 96 ASP f 1 4940 2 1 1 1 97 ASN . B . 97 ASN k 1 4940 2 1 1 1 98 CYS . B . 98 CYS l 1 4940 2 1 1 1 99 ASN . B . 99 ASN m 1 4940 2 1 1 1 100 LYS . B . 100 LYS m 1 4940 2 1 1 1 101 ILE . B . 101 ILE m 1 4940 2 1 1 1 102 TYR . B . 102 TYR m 1 4940 2 1 1 1 103 ASN . B . 103 ASN m 1 4940 2 1 1 1 104 LEU . B . 104 LEU m 1 4940 2 1 1 1 105 ALA . B . 105 ALA m 1 4940 2 1 1 1 106 LYS . B . 106 LYS m 1 4940 2 1 1 1 107 CYS . B . 107 CYS m 1 4940 2 1 1 1 108 VAL . B . 108 VAL m 1 4940 2 1 1 1 109 GLN . B . 109 GLN m 1 4940 2 1 1 1 110 GLU . B . 110 GLU m 1 4940 2 1 1 1 111 SER . B . 111 SER m 1 4940 2 1 1 1 112 ALA . B . 112 ALA m 1 4940 2 1 1 1 113 PRO . B . 113 PRO m 1 4940 2 1 1 1 114 ASP . B . 114 ASP b 1 4940 2 1 1 1 115 VAL . B . 115 VAL c 1 4940 2 1 1 1 116 TRP . B . 116 TRP c 1 4940 2 1 1 1 117 PHE . B . 117 PHE d 1 4940 2 1 1 1 118 VAL . B . 118 VAL . 1 4940 2 1 1 1 119 ILE . B . 119 ILE . 1 4940 2 stop_ save_