data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1i1j_6396#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1i1j.ent _PB_list.Output_file_name bmr5220_1i1j_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr5220_1i1j_PB.str _PB_list.AA_seq_one_letter_code GPMPKLADRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVDVKTDKWDFYC _PB_list.PB_seq_code zzcdfbfbdcdfbfnlpacfbdcddfbdcddfbfkbccddehiacddfbdcehjlmmpccdddddfbghiacfbdcdddfklpccfbdfbdcfbccdddfklmnzz _PB_list.PDB_ID 1I1J _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.231 _PB_list.PDBX_refine_ls_R_factor_R_work 0.208 _PB_list.PDBX_refine_ls_d_res_high 1.39 _PB_list.PDBX_refine_ls_d_res_low 43.85 _PB_list.Entry_ID 5220 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 MET . A . 1 MET . 1 5220 1 1 1 1 2 GLY . A . 2 GLY . 1 5220 1 1 1 1 3 PRO . A . 3 PRO . 1 5220 1 1 1 1 4 MET . A . 4 MET c 1 5220 1 1 1 1 5 PRO . A . 5 PRO d 1 5220 1 1 1 1 6 LYS . A . 6 LYS f 1 5220 1 1 1 1 7 LEU . A . 7 LEU b 1 5220 1 1 1 1 8 ALA . A . 8 ALA f 1 5220 1 1 1 1 9 ASP . A . 9 ASP b 1 5220 1 1 1 1 10 ARG . A . 10 ARG d 1 5220 1 1 1 1 11 LYS . A . 11 LYS c 1 5220 1 1 1 1 12 LEU . A . 12 LEU d 1 5220 1 1 1 1 13 CYS . A . 13 CYS f 1 5220 1 1 1 1 14 ALA . A . 14 ALA b 1 5220 1 1 1 1 15 ASP . A . 15 ASP f 1 5220 1 1 1 1 16 GLN . A . 16 GLN n 1 5220 1 1 1 1 17 GLU . A . 17 GLU l 1 5220 1 1 1 1 18 CYS . A . 18 CYS p 1 5220 1 1 1 1 19 SER . A . 19 SER a 1 5220 1 1 1 1 20 HIS . A . 20 HIS c 1 5220 1 1 1 1 21 PRO . A . 21 PRO f 1 5220 1 1 1 1 22 ILE . A . 22 ILE b 1 5220 1 1 1 1 23 SER . A . 23 SER d 1 5220 1 1 1 1 24 MET . A . 24 MET c 1 5220 1 1 1 1 25 ALA . A . 25 ALA d 1 5220 1 1 1 1 26 VAL . A . 26 VAL d 1 5220 1 1 1 1 27 ALA . A . 27 ALA f 1 5220 1 1 1 1 28 LEU . A . 28 LEU b 1 5220 1 1 1 1 29 GLN . A . 29 GLN d 1 5220 1 1 1 1 30 ASP . A . 30 ASP c 1 5220 1 1 1 1 31 TYR . A . 31 TYR d 1 5220 1 1 1 1 32 MET . A . 32 MET d 1 5220 1 1 1 1 33 ALA . A . 33 ALA f 1 5220 1 1 1 1 34 PRO . A . 34 PRO b 1 5220 1 1 1 1 35 ASP . A . 35 ASP f 1 5220 1 1 1 1 36 CYS . A . 36 CYS k 1 5220 1 1 1 1 37 ARG . A . 37 ARG b 1 5220 1 1 1 1 38 PHE . A . 38 PHE c 1 5220 1 1 1 1 39 LEU . A . 39 LEU c 1 5220 1 1 1 1 40 THR . A . 40 THR d 1 5220 1 1 1 1 41 ILE . A . 41 ILE d 1 5220 1 1 1 1 42 HIS . A . 42 HIS e 1 5220 1 1 1 1 43 ARG . A . 43 ARG h 1 5220 1 1 1 1 44 GLY . A . 44 GLY i 1 5220 1 1 1 1 45 GLN . A . 45 GLN a 1 5220 1 1 1 1 46 VAL . A . 46 VAL c 1 5220 1 1 1 1 47 VAL . A . 47 VAL d 1 5220 1 1 1 1 48 TYR . A . 48 TYR d 1 5220 1 1 1 1 49 VAL . A . 49 VAL f 1 5220 1 1 1 1 50 PHE . A . 50 PHE b 1 5220 1 1 1 1 51 SER . A . 51 SER d 1 5220 1 1 1 1 52 LYS . A . 52 LYS c 1 5220 1 1 1 1 53 LEU . A . 53 LEU e 1 5220 1 1 1 1 54 LYS . A . 54 LYS h 1 5220 1 1 1 1 55 GLY . A . 55 GLY j 1 5220 1 1 1 1 56 ARG . A . 56 ARG l 1 5220 1 1 1 1 57 GLY . A . 57 GLY m 1 5220 1 1 1 1 58 ARG . A . 58 ARG m 1 5220 1 1 1 1 59 LEU . A . 59 LEU p 1 5220 1 1 1 1 60 PHE . A . 60 PHE c 1 5220 1 1 1 1 61 TRP . A . 61 TRP c 1 5220 1 1 1 1 62 GLY . A . 62 GLY d 1 5220 1 1 1 1 63 GLY . A . 63 GLY d 1 5220 1 1 1 1 64 SER . A . 64 SER d 1 5220 1 1 1 1 65 VAL . A . 65 VAL d 1 5220 1 1 1 1 66 GLN . A . 66 GLN d 1 5220 1 1 1 1 67 GLY . A . 67 GLY f 1 5220 1 1 1 1 68 ASP . A . 68 ASP b 1 5220 1 1 1 1 69 TYR . A . 69 TYR g 1 5220 1 1 1 1 70 TYR . A . 70 TYR h 1 5220 1 1 1 1 71 GLY . A . 71 GLY i 1 5220 1 1 1 1 72 ASP . A . 72 ASP a 1 5220 1 1 1 1 73 LEU . A . 73 LEU c 1 5220 1 1 1 1 74 ALA . A . 74 ALA f 1 5220 1 1 1 1 75 ALA . A . 75 ALA b 1 5220 1 1 1 1 76 ARG . A . 76 ARG d 1 5220 1 1 1 1 77 LEU . A . 77 LEU c 1 5220 1 1 1 1 78 GLY . A . 78 GLY d 1 5220 1 1 1 1 79 TYR . A . 79 TYR d 1 5220 1 1 1 1 80 PHE . A . 80 PHE d 1 5220 1 1 1 1 81 PRO . A . 81 PRO f 1 5220 1 1 1 1 82 SER . A . 82 SER k 1 5220 1 1 1 1 83 SER . A . 83 SER l 1 5220 1 1 1 1 84 ILE . A . 84 ILE p 1 5220 1 1 1 1 85 VAL . A . 85 VAL c 1 5220 1 1 1 1 86 ARG . A . 86 ARG c 1 5220 1 1 1 1 87 GLU . A . 87 GLU f 1 5220 1 1 1 1 88 ASP . A . 88 ASP b 1 5220 1 1 1 1 89 GLN . A . 89 GLN d 1 5220 1 1 1 1 90 THR . A . 90 THR f 1 5220 1 1 1 1 91 LEU . A . 91 LEU b 1 5220 1 1 1 1 92 LYS . A . 92 LYS d 1 5220 1 1 1 1 93 PRO . A . 93 PRO c 1 5220 1 1 1 1 94 GLY . A . 94 GLY f 1 5220 1 1 1 1 95 LYS . A . 95 LYS b 1 5220 1 1 1 1 96 VAL . A . 96 VAL c 1 5220 1 1 1 1 97 ASP . A . 97 ASP c 1 5220 1 1 1 1 98 VAL . A . 98 VAL d 1 5220 1 1 1 1 99 LYS . A . 99 LYS d 1 5220 1 1 1 1 100 THR . A . 100 THR d 1 5220 1 1 1 1 101 ASP . A . 101 ASP f 1 5220 1 1 1 1 102 LYS . A . 102 LYS k 1 5220 1 1 1 1 103 TRP . A . 103 TRP l 1 5220 1 1 1 1 104 ASP . A . 104 ASP m 1 5220 1 1 1 1 105 PHE . A . 105 PHE n 1 5220 1 1 1 1 106 TYR . A . 106 TYR . 1 5220 1 1 1 1 107 CYS . A . 107 CYS . 1 5220 1 1 1 1 108 GLN . A . 108 GLN . 1 5220 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1i1j_6396#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1i1j.ent _PB_list.Output_file_name bmr5220_1i1j_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr5220_1i1j_PB.str _PB_list.AA_seq_one_letter_code MPKLADRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVDVKTDKWDFYC _PB_list.PB_seq_code zzfbfbdcdfbfnopacfbdcddfbdcddfbfkbccddehiacddfbdcehjlmmpccdddddfbghiacfbdcdddfklpccfbdfbdcfbccdddfklmgzz _PB_list.PDB_ID 1I1J _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.231 _PB_list.PDBX_refine_ls_R_factor_R_work 0.208 _PB_list.PDBX_refine_ls_d_res_high 1.39 _PB_list.PDBX_refine_ls_d_res_low 43.85 _PB_list.Entry_ID 5220 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 MET . B . 1 MET . 1 5220 2 1 1 1 2 GLY . B . 2 GLY . 1 5220 2 1 1 1 3 PRO . B . 3 PRO . 1 5220 2 1 1 1 4 MET . B . 4 MET . 1 5220 2 1 1 1 5 PRO . B . 5 PRO . 1 5220 2 1 1 1 6 LYS . B . 6 LYS f 1 5220 2 1 1 1 7 LEU . B . 7 LEU b 1 5220 2 1 1 1 8 ALA . B . 8 ALA f 1 5220 2 1 1 1 9 ASP . B . 9 ASP b 1 5220 2 1 1 1 10 ARG . B . 10 ARG d 1 5220 2 1 1 1 11 LYS . B . 11 LYS c 1 5220 2 1 1 1 12 LEU . B . 12 LEU d 1 5220 2 1 1 1 13 CYS . B . 13 CYS f 1 5220 2 1 1 1 14 ALA . B . 14 ALA b 1 5220 2 1 1 1 15 ASP . B . 15 ASP f 1 5220 2 1 1 1 16 GLN . B . 16 GLN n 1 5220 2 1 1 1 17 GLU . B . 17 GLU o 1 5220 2 1 1 1 18 CYS . B . 18 CYS p 1 5220 2 1 1 1 19 SER . B . 19 SER a 1 5220 2 1 1 1 20 HIS . B . 20 HIS c 1 5220 2 1 1 1 21 PRO . B . 21 PRO f 1 5220 2 1 1 1 22 ILE . B . 22 ILE b 1 5220 2 1 1 1 23 SER . B . 23 SER d 1 5220 2 1 1 1 24 MET . B . 24 MET c 1 5220 2 1 1 1 25 ALA . B . 25 ALA d 1 5220 2 1 1 1 26 VAL . B . 26 VAL d 1 5220 2 1 1 1 27 ALA . B . 27 ALA f 1 5220 2 1 1 1 28 LEU . B . 28 LEU b 1 5220 2 1 1 1 29 GLN . B . 29 GLN d 1 5220 2 1 1 1 30 ASP . B . 30 ASP c 1 5220 2 1 1 1 31 TYR . B . 31 TYR d 1 5220 2 1 1 1 32 MET . B . 32 MET d 1 5220 2 1 1 1 33 ALA . B . 33 ALA f 1 5220 2 1 1 1 34 PRO . B . 34 PRO b 1 5220 2 1 1 1 35 ASP . B . 35 ASP f 1 5220 2 1 1 1 36 CYS . B . 36 CYS k 1 5220 2 1 1 1 37 ARG . B . 37 ARG b 1 5220 2 1 1 1 38 PHE . B . 38 PHE c 1 5220 2 1 1 1 39 LEU . B . 39 LEU c 1 5220 2 1 1 1 40 THR . B . 40 THR d 1 5220 2 1 1 1 41 ILE . B . 41 ILE d 1 5220 2 1 1 1 42 HIS . B . 42 HIS e 1 5220 2 1 1 1 43 ARG . B . 43 ARG h 1 5220 2 1 1 1 44 GLY . B . 44 GLY i 1 5220 2 1 1 1 45 GLN . B . 45 GLN a 1 5220 2 1 1 1 46 VAL . B . 46 VAL c 1 5220 2 1 1 1 47 VAL . B . 47 VAL d 1 5220 2 1 1 1 48 TYR . B . 48 TYR d 1 5220 2 1 1 1 49 VAL . B . 49 VAL f 1 5220 2 1 1 1 50 PHE . B . 50 PHE b 1 5220 2 1 1 1 51 SER . B . 51 SER d 1 5220 2 1 1 1 52 LYS . B . 52 LYS c 1 5220 2 1 1 1 53 LEU . B . 53 LEU e 1 5220 2 1 1 1 54 LYS . B . 54 LYS h 1 5220 2 1 1 1 55 GLY . B . 55 GLY j 1 5220 2 1 1 1 56 ARG . B . 56 ARG l 1 5220 2 1 1 1 57 GLY . B . 57 GLY m 1 5220 2 1 1 1 58 ARG . B . 58 ARG m 1 5220 2 1 1 1 59 LEU . B . 59 LEU p 1 5220 2 1 1 1 60 PHE . B . 60 PHE c 1 5220 2 1 1 1 61 TRP . B . 61 TRP c 1 5220 2 1 1 1 62 GLY . B . 62 GLY d 1 5220 2 1 1 1 63 GLY . B . 63 GLY d 1 5220 2 1 1 1 64 SER . B . 64 SER d 1 5220 2 1 1 1 65 VAL . B . 65 VAL d 1 5220 2 1 1 1 66 GLN . B . 66 GLN d 1 5220 2 1 1 1 67 GLY . B . 67 GLY f 1 5220 2 1 1 1 68 ASP . B . 68 ASP b 1 5220 2 1 1 1 69 TYR . B . 69 TYR g 1 5220 2 1 1 1 70 TYR . B . 70 TYR h 1 5220 2 1 1 1 71 GLY . B . 71 GLY i 1 5220 2 1 1 1 72 ASP . B . 72 ASP a 1 5220 2 1 1 1 73 LEU . B . 73 LEU c 1 5220 2 1 1 1 74 ALA . B . 74 ALA f 1 5220 2 1 1 1 75 ALA . B . 75 ALA b 1 5220 2 1 1 1 76 ARG . B . 76 ARG d 1 5220 2 1 1 1 77 LEU . B . 77 LEU c 1 5220 2 1 1 1 78 GLY . B . 78 GLY d 1 5220 2 1 1 1 79 TYR . B . 79 TYR d 1 5220 2 1 1 1 80 PHE . B . 80 PHE d 1 5220 2 1 1 1 81 PRO . B . 81 PRO f 1 5220 2 1 1 1 82 SER . B . 82 SER k 1 5220 2 1 1 1 83 SER . B . 83 SER l 1 5220 2 1 1 1 84 ILE . B . 84 ILE p 1 5220 2 1 1 1 85 VAL . B . 85 VAL c 1 5220 2 1 1 1 86 ARG . B . 86 ARG c 1 5220 2 1 1 1 87 GLU . B . 87 GLU f 1 5220 2 1 1 1 88 ASP . B . 88 ASP b 1 5220 2 1 1 1 89 GLN . B . 89 GLN d 1 5220 2 1 1 1 90 THR . B . 90 THR f 1 5220 2 1 1 1 91 LEU . B . 91 LEU b 1 5220 2 1 1 1 92 LYS . B . 92 LYS d 1 5220 2 1 1 1 93 PRO . B . 93 PRO c 1 5220 2 1 1 1 94 GLY . B . 94 GLY f 1 5220 2 1 1 1 95 LYS . B . 95 LYS b 1 5220 2 1 1 1 96 VAL . B . 96 VAL c 1 5220 2 1 1 1 97 ASP . B . 97 ASP c 1 5220 2 1 1 1 98 VAL . B . 98 VAL d 1 5220 2 1 1 1 99 LYS . B . 99 LYS d 1 5220 2 1 1 1 100 THR . B . 100 THR d 1 5220 2 1 1 1 101 ASP . B . 101 ASP f 1 5220 2 1 1 1 102 LYS . B . 102 LYS k 1 5220 2 1 1 1 103 TRP . B . 103 TRP l 1 5220 2 1 1 1 104 ASP . B . 104 ASP m 1 5220 2 1 1 1 105 PHE . B . 105 PHE g 1 5220 2 1 1 1 106 TYR . B . 106 TYR . 1 5220 2 1 1 1 107 CYS . B . 107 CYS . 1 5220 2 1 1 1 108 GLN . B . 108 GLN . 1 5220 2 stop_ save_